Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq33 199 5e-46 seq36 176 6e-39 >seq33 Length=884058 Score = 199 bits (220), Expect = 5e-46 Identities = 605/923 (66%), Gaps = 9/923 (1%) Strand=Plus/Minus Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 || |||| ||| || || |||||||| || || || | | | | ||||| ||||| Sbjct 111205 AATGCAATAGAGGCAAGGTTACAAACTGCGACTTCCTCTGGAGATGTGTATTGAATAATC 111146 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 ||||| || | ||| | ||||| || || || | |||||| || | ||| Sbjct 111145 TCAGTACACAAATTGGATGATGAAATGGTACCCAAGTTCTTTTGATTTGATTTCTCATTA 111086 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || ||||| || || |||||| | || |||||||||||||| |||||||| | ||| || Sbjct 111085 CAAGCATCTTTGTAGAGAATATAAGGTGTACCAGTTTCAATTTGAGATTCCACAATAGCA 111026 Query 71875 TTCCAGACGACTCGAGCCTTTATTA-TATTCTTG-TATCTCTTTTCTCT-TTCGTATTGT 71931 ||| | || ||||||| | | | |||| | || || | | ||| |||| Sbjct 111025 AACCACAAATCTTGAGCCTTAACAACTTTTCTAGCTAATCCTGGAGTTTGTTCATATTTG 110966 Query 71932 GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGG 71990 ||| | | | ||| || ||||| ||| | | | | || || ||||| || Sbjct 110965 AGATAAAGTTTTCTGAATTCCTCTCCATG-GCACTCTGCGAGACCTGGGGCCTCATTAGG 110907 Query 71991 ACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCA 72050 ||| | | ||||| ||| ||| || || |||| ||||||||||||| |||||| Sbjct 110906 ACAAAAGAGGGACCAATCTTCATTTCCAGGAACACGTTCCATAAAGAGATCACAAATCCA 110847 Query 72051 AAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 72109 ||| || ||| |||| || | | | | ||| || || || ||| || || |||| Sbjct 110846 AAGGGC-ATAGAATAAGTCACGAGCACGAATCTCTTCCTTACCATGATTTTTCTTTAGAT 110788 Query 72110 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169 | | |||| | | | ||||| ||||| || || ||||||| || | | | || | Sbjct 110787 CCAAGAACTCAAAGACATCAGCGTGCCATGGCTCTAAGTATACTGCAAAAGCACCTTTTC 110728 Query 72170 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 72229 || ||||| || |||| || | ||| |||| ||| | || | |||||||| | Sbjct 110727 TCTTACCGCCTCCTTGGTCTACATAACGAGCAGTGTCGTTAAATACACGTAACATTGGTA 110668 Query 72230 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGC 72289 | ||||||||| | || || || || ||||||| | | |||||||| ||| Sbjct 110667 CTAAACCATTGGAAGTTCCGTTAGTTCCACGGATATAGGATTGAGCAGCACGAATCTTGT 110608 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 || || | ||| ||||| || || |||| || ||||||||| |||| || |||| Sbjct 110607 GAACTGCAATACCAATTCCACCAGCAGATTTACTAATCAATGCGCATTGTTTCAAAGTAT 110548 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-G 72408 | ||||| || || || ||| || |||| | || | ||||| ||||| || | Sbjct 110547 CGTAGATACCGTCAATGGAATCCTCTTTCATTTGAACCAAGAAACAAGATGACATCTGAG 110488 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 || | || || ||||| || || ||||||| ||| || |||||| | || || Sbjct 110487 GGAATGGT-GTACCAGCATTGAACAATGTAGGAGTAGCATGAGTAAACAACTTCATGGAG 110429 Query 72469 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACA 72528 || | || ||||||| ||| | | | || | |||||| || | | ||| Sbjct 110428 AGCTTTTCATAAGTCTCAAAAGCAGCGTTCAAGTCAGTTCCATGTATACCAATAGAGACT 110369 Query 72529 CGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGAT 72588 | ||| |||||||| ||||||||||| || || | ||| || ||| || ||| Sbjct 110368 CTCATCAACATATGTTGAGGTCTTTCCACAATGATACCATTGATACGTTGCAAATATGAT 110309 Query 72589 TTTTCCAAAGTTTTAAAACCAAA 72611 |||||||||| ||||||||||| Sbjct 110308 CTTTCCAAAGTCTTAAAACCAAA 110286 >seq36 Length=2033623 Score = 176 bits (194), Expect = 6e-39 Identities = 218/296 (74%), Gaps = 7/296 (2%) Strand=Plus/Minus Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| |||||||| ||||||||||| || || || || |||||||||||||| || | | Sbjct 729763 TTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTGGTA 729704 Query 42420 CCTGTACTTCTGTACAAAATC--GTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 || ||||| | |||| ||| |||| |||||| || || || || || || Sbjct 729703 TTTGAACTTCACTCATAAATTTAGTT--GCTAGATTTTCATTAACAATACCATCTGAAGC 729646 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT--- 42534 ||||||||| || ||||||| || |||| |||||| | |||| ||||| Sbjct 729645 TGCAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCATTTAACTTATTTTC 729586 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| ||||||||||| | | || ||| | |||||| | ||||| ||||| |||||||| Sbjct 729585 CCATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCTGC 729526 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 | ||||||||||||||| || || | |||| |||||| || | ||||||||||| Sbjct 729525 TTGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCTAT 729470 Score = 140 bits (154), Expect = 4e-28 Identities = 397/595 (67%), Gaps = 29/595 (5%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTT---TTCGAAAAAATTAGTCTTTCCTTCCAATGATATA 41830 ||||| |||||| | || ||| ||| ||||| || | |||| || ||| || || Sbjct 730408 TTTTGATATTCAGCTAC---TTTACCTTCAAAAAAGTTTGATTTTCTTTGCAAAGAAATC 730352 Query 41831 TTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA 41890 ||||||| |||| || ||||||||| |||| |||| ||||| | || || ||| Sbjct 730351 ATTTCCATCCAATCGAAAGGATTGGTAGAATTAAAAATCTTTTTGTAACC-AAGAGAGAC 730293 Query 41891 ATCAAT-CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 41949 | | | | ||||||| || || || ||| | ||| | | ||||| || || Sbjct 730292 AACTAGACGATCTGCGCAAAACTCAATGTATTGTGACATGGCTCTGCTGTTCATACCAAT 730233 Query 41950 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 42009 || | |||||| |||| |||| | |||||| | |||| | || || ||| | || Sbjct 730232 GAGATCAACTGGTAGAGATTCAGTTACAAATTCCTTTTCACATGCAACAGCATCTTTGAT 730173 Query 42010 AATAGATCT-TACTG-TTTCTTCACTCGGTGGATACAATAAATGTTTAA---ACATCAAA 42064 ||| ||| || || ||| |||| | || | | ||||| | | |||| Sbjct 730172 AATG--TCTATAATGATTTTTTCATCTAATCTATTTACGA---GTTTACTGTAGAGCAAA 730118 Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || | || || ||||| ||||| | |||||| ||||| ||||| || || | Sbjct 730117 CAAGCAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTCAAA 730058 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGA-CGCAAATGATCCAGAAAAGAA 42183 || ||||||| || | || || |||||||| || || | ||| | ||| || || Sbjct 730057 CCTGGCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACTA-CCACTGAAAAA 729999 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| ||||| || || ||||| || | | ||||||| || | | || || || Sbjct 729998 GATACCTTCAACAGCTGCAAATGCCACCAATCTCTCTGCAAAT---GATCTAGAATTGAT 729942 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT-AA 42302 ||| | ||||| || ||||||||||| ||||| || || |||||||| ||||| || Sbjct 729941 CCATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGCATTGAA 729882 Query 42303 AGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGATCAAAAGACTA 42355 | ||| ||||| | || | ||||| ||||||||| || ||||||||| Sbjct 729881 TAATTTAGCTTTTT---GTTCTGGGTTTTTAATATATGTATCAATTAAAAGACTA 729830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138746981040