Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq27 120 3e-22 seq30 116 3e-21 seq38 98.7 9e-16 seq12 89.7 5e-13 seq31 84.2 2e-11 >seq27 Length=1864556 Score = 120 bits (132), Expect = 3e-22 Identities = 173/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| | || || || || || ||||| ||||| | Sbjct 1617517 AAAAATTTGCATACCACCTCTTAATCTGAGTACTAAATGTAATGTTGATTCTTTTTGAAT 1617458 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | || || || ||| || | ||||| ||| |||||||||||||| Sbjct 1617457 GTTGTAATCAG--AGAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAATCTT 1617400 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| || |||||||||||||| || | |||||| || ||||| | | ||| Sbjct 1617399 TGTTGATCGGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTGACATTTTCAATGGTG 1617340 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| || | || || ||||| ||||| | |||||| ||||| || ||| Sbjct 1617339 TCGGAACCTTCGACTTCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGC 1617280 Query 95006 AT 95007 || Sbjct 1617279 AT 1617278 Score = 102 bits (112), Expect = 7e-17 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| | |||||||| | ||| ||||| ||||| | Sbjct 1617745 AAAAATTTGCATACCACCTCTTAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGAAT 1617686 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||||||| ||| |||| | || || | ||||| || | || || | |||| Sbjct 1617685 GTTATAATCAG--ATAATGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATAAGTCTT 1617628 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| || ||||||||||||||||| | |||||| || || || | | ||| Sbjct 1617627 TGTTGATCGGGTGGAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTG 1617568 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || |||| || || ||||| ||||| | || || ||||| || ||| Sbjct 1617567 TCTGAACCTTCAACTTCAAGGGTAATTGTTTTACCAGTTAAGGTCTTTACAAAAATTTGC 1617508 Query 95006 AT 95007 || Sbjct 1617507 AT 1617506 Score = 102 bits (112), Expect = 7e-17 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| | || || || || || ||||| ||||| | Sbjct 1695926 AAAAATTTGCATACCACCTCTTAATCTGAGTACTAAATGTAATGTTGATTCTTTTTGGAT 1695985 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||||| | || || || || || | ||||| ||| | || || | |||| Sbjct 1695986 GTTATAATCGG--AAAGAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGTCTT 1696043 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || || ||||||||||| || | |||||| ||||| ||| | | ||| Sbjct 1696044 TGTTGGTCGGGTGGGATACCTTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTG 1696103 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || || ||||| ||||| | ||||| |||||||| ||| Sbjct 1696104 TCTGAGCCTTCAACTTCTAAGGTAATAGTTTTACCAGTTAAGGTTTTAACAAAGATTTGC 1696163 Query 95006 AT 95007 || Sbjct 1696164 AT 1696165 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| | || || || | || ||||| ||||| | Sbjct 1617973 AAAAATTTGCATACCACCTCTTAATCTGAGTACTAAATGGAGGGTTGATTCTTTTTGGAT 1617914 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | || || || ||| || | ||||| ||| | || || | |||| Sbjct 1617913 GTTGTAATCAG--AAAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAAATGAGTCTT 1617856 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || || |||||||||||||| | |||||| ||||| ||| | | ||| Sbjct 1617855 TGTTGGTCGGGTGGGATACCTTCTTTGTCTTGAATTTTAGCCTTTACGTTTTCAATGGTG 1617796 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | || |||||||| ||||| | |||||| ||||| || ||| Sbjct 1617795 TCGGAACCTTCTACTTCTAAGGTAATGGTTTTACCAGTCAAAGTTTTAACAAAAATTTGC 1617736 Query 95006 AT 95007 || Sbjct 1617735 AT 1617734 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| | || || || | ||| ||||| ||||| | ||| ||||| Sbjct 1618188 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAG-- 1618131 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||| || | ||||| ||| |||||||||||||||| || || || | Sbjct 1618130 AGAGGGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCGGGTG 1618071 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||||||||| | |||||| || || || | | || || | || | Sbjct 1618070 GAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCTGAACCTTCAA 1618011 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || ||||| ||||| | || || ||||| || ||||| Sbjct 1618010 CTTCAAGGGTAATAGTTTTACCAGTCAAGGTCTTTACAAAAATTTGCAT 1617962 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| | |||||||| | ||| ||||| ||||| | |||||| ||| Sbjct 1695711 CCACCTCTTAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCGGAT 1695770 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || | ||||| || |||| || | |||||| || || || || Sbjct 1695771 AAAGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGG 1695830 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || | |||||| || || || | | ||| || | || || Sbjct 1695831 ATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCTGAACCTTCAACT 1695890 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || ||||| ||||| | || || ||||| || ||||| Sbjct 1695891 TCAAGGGTAATTGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 1695937 >seq30 Length=714265 Score = 116 bits (128), Expect = 3e-21 Identities = 148/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTC 94868 |||||||| ||||| | || ||||| | || || || || |||| ||||| | Sbjct 370240 GTAGATTCTTTTTGGATATTGTAATCAG--AGAGAGTACGACCGTCTTCCAATTGTTTAC 370183 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || | |||||||| | ||| ||||| || || |||||||||||||| | ||||| |||| Sbjct 370182 CGGCGAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATTTTGGCCT 370123 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 ||||| ||| || || | ||||| || | ||||||||||| ||||| | || Sbjct 370122 TGACGTTTTCGATGGTATCTGAACCTTCGACTTCTAAGGTGATGGTTTTACCAGTTAAAG 370063 Query 94989 TTTTCACAAAGATCTGCATGCT 95010 |||| |||||||| |||||||| Sbjct 370062 TTTTAACAAAGATTTGCATGCT 370041 >seq38 Length=878590 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||| | || | ||||| || | ||| ||||| ||||| | Sbjct 148651 AAAAATTTGCATACCTCCTCTGAGTCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGAT 148592 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | || || || ||| || | ||||| ||| |||||||||| | | Sbjct 148591 GTTGTAATCAG--AGAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGT 148534 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || || ||||||||||| || | ||||| || ||||| ||| || Sbjct 148533 TGTTGGTCGGGTGGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTA 148474 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || |||| || ||||| || ||||| | || || ||||| || ||| Sbjct 148473 TCAGAACCTTCAACTTCAAGGGTAATGGTCTTACCAGTCAAGGTCTTAACAAAAATTTGC 148414 Query 95006 AT 95007 || Sbjct 148413 AT 148412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| | || | ||||| || | || ||||| ||||| | Sbjct 148423 AAAAATTTGCATACCACCTCTGAGTCTGAGTACCAAATGGAGGGTTGATTCTTTTTGGAT 148364 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGC-CAAAGATTAATCT 94884 ||| |||||| | || || || ||| || | ||||| ||| | || || | ||| Sbjct 148363 GTTGTAATCGG--AGAGAGTACGACCATCTTCTAATTGTTTACCGAGCGAAAATGAGTCT 148306 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 ||| ||||| || || ||||||||||| || | ||||| || ||||| ||| || Sbjct 148305 TTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATGGT 148246 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | || || || | || |||||||| ||||| | ||||| |||||||| || Sbjct 148245 GTCGGAACCTTCAACTTCTAGGGTAATGGTTTTACCAGTTAATGTTTTAACAAAGATTTG 148186 Query 95005 CAT 95007 ||| Sbjct 148185 CAT 148183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||||| |||| || | |||| || | ||||||||| ||||| | ||| ||||| Sbjct 149094 CCTCCTCTTAATCT-AAGAACAAGATGGAGAGTAGATTCTTTTTGAATGTTGTAATCAG- 149037 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || || || ||| || | ||||| || |||| || | |||||| || || || Sbjct 149036 -AAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGT 148978 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || ||||||||||| || | ||||| || ||||| ||| || |||| || Sbjct 148977 GGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATGGTATCAGAACCTTCA 148918 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || ||||| || ||||| | || || |||||||| ||||| Sbjct 148917 ACTTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCAT 148868 >seq12 Length=1224149 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| ||| ||||||| | |||||| ||||| || || |||||||||||||| | ||| Sbjct 427336 TGTTTACCGGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATT 427277 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || |||||||| ||| || || | || || || | || ||||| || ||| Sbjct 427276 TTGGCCTTGACATTTTCGATGGTATCTGAACCTTCAACTTCTAAGGTAATGGTCTTACCA 427217 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || | |||||| || || |||||||| || Sbjct 427216 GTTAAAGTTTTAACGAAAATCTGCATTCT 427188 >seq31 Length=145395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || ||||| ||||| | ||| ||||| | || || || |||||| || ||||| | Sbjct 7842 GTTGATTCTTTTTGAATGTTGTAATCAG--AGAGAGTACGACCATCCTCAAGTTGTTTAC 7899 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | |||||| || || || || |||||||||||||| | |||||| | || Sbjct 7900 CAGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGAATTTTGGTCT 7959 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | || |||| || || || | || || || || ||||| | | Sbjct 7960 TTACATTTTCAATGGTATCAGAACCTTCAACTTCCAAAGTAATTGTCTTACCAGTCAATG 8019 Query 94989 TTTTCACAAAGATCTGCAT 95007 |||| |||||||| ||||| Sbjct 8020 TTTTGACAAAGATTTGCAT 8038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290897403440