Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq38 104 2e-17 seq30 100 2e-16 seq27 95.1 9e-15 seq31 93.3 3e-14 seq12 82.4 5e-11 >seq38 Length=878590 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || || || || || ||||||||| ||||| |||| | Sbjct 148868 ATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACCATTACCTTGGAAGTTGAAGGTTCT 148927 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| |||||||| ||| | || ||||| Sbjct 148928 GATACCATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAA 148987 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || |||||||| |||||| |||||||| ||| | | |||||||| Sbjct 148988 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 149047 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||||||||| ||| | || | | ||| ||||||| Sbjct 149048 ATTCAAAAAGAATCTACTCTCCATCTTGTTCTTAGATTAAGAGGAGG 149094 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||||||||| || |||||||||||| | ||| |||| | Sbjct 148182 AATGCAAATCTTTGTTAAAACATTAACTGGTAAAACCATTACCCTAGAAGTTGAAGGTTC 148241 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| |||||||| ||| | || | || Sbjct 148242 CGACACCATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCA 148301 Query 21953 ACAGAGACTTATCTTTGCT-GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 ||| ||||| || || ||| || |||||| |||||||| ||| | ||||||||| Sbjct 148302 ACAAAGACTCATTTTCGCTCGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATTACA 148361 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 | || || || ||||| || || ||| ||||| Sbjct 148362 ACATCCAAAAAGAATCAACCCTCCATTTGGTA 148393 >seq30 Length=714265 Score = 100 bits (110), Expect = 2e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCA-TTACCGTGGAAACGGAAGCCGC 21892 |||||||| ||| | ||||| || || || ||||||| ||||| ||||| |||| | Sbjct 356320 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCAATTACCTTGGAAGTTGAAGGATC 356379 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| || ||| |||||||| ||| | || | || Sbjct 356380 AGATACTATTGAGAATGTCAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCCGATCA 356439 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| |||||||| |||||||| |||||| | |||||| ||| | | || ||||| Sbjct 356440 ACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTACAA 356499 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 |||||| |||||||| ||||| ||| Sbjct 356500 TATTCAAAAGGAATCAACTCTCCAT 356524 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||||||| ||||| |||| || Sbjct 356549 ATGCAAATCTTTGTAAAGACTCTTACAGGTAAAACCATTACCTTGGAAGTTGAAGGATCA 356608 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| |||||||| ||| | || ||||| Sbjct 356609 GATACTATTGAGAATGTTAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCCGACCAA 356668 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || |||||||| |||||| | |||||| ||| | | || |||||| Sbjct 356669 CAAAGACTCATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCTGACTACAAT 356728 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 || || || ||||||||||| ||| | ||| Sbjct 356729 ATCCAAAAAGAATCTACTCTCCATTTAGTA 356758 >seq27 Length=1864556 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| ||||||| ||||| || ||||| |||||| | ||| |||| Sbjct 1617275 AAAATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAAGGT 1617334 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || | || |||||| |||||||| ||| | || | Sbjct 1617335 TCCGACACCATTGAAAATGTCAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCCGAT 1617394 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | |||||||| || |||||| |||||||| ||| | | |||||| Sbjct 1617395 CAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTAC 1617454 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || ||||| || | ||| | ||| | | ||| |||| || Sbjct 1617455 AACATTCAAAAAGAATCAACATTACATTTAGTACTCAGATTAAGAGGTGG 1617504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| || || || |||||||||||| | ||| |||| | Sbjct 1617734 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACCATTACCTTAGAAGTAGAAGGTTCC 1617793 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| |||||| || ||||| ||| | || ||||| Sbjct 1617794 GACACCATTGAAAACGTAAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCCGACCAA 1617853 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || || |||||| |||||||| ||| | | |||||||| Sbjct 1617854 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 1617913 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| || || ||| | ||| | | ||| |||| || Sbjct 1617914 ATCCAAAAAGAATCAACCCTCCATTTAGTACTCAGATTAAGAGGTGG 1617960 >seq31 Length=145395 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||||| || || || || ||||| ||||| |||| | Sbjct 8038 ATGCAAATCTTTGTCAAAACATTGACTGGTAAGACAATTACTTTGGAAGTTGAAGGTTCT 7979 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || ||||| ||| | || ||||| Sbjct 7978 GATACCATTGAAAATGTAAAGACCAAAATTCAAGACAAAGAAGGTATCCCACCCGACCAA 7919 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||||||||||||||| |||||||| || ||| ||| | | |||||||| Sbjct 7918 CAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTCTCTGATTACAAC 7859 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 ||||| || ||||| || || ||| Sbjct 7858 ATTCAAAAAGAATCAACACTCCAT 7835 >seq12 Length=1224149 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || ||||||| ||||| || || ||||||||| | ||| |||| | Sbjct 427190 AATGCAGATTTTCGTTAAAACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAAGGTTC 427249 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||| || ||||| ||| | || | || Sbjct 427250 AGATACCATCGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCA 427309 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| |||||||||||||| || |||||| ||||||| || | | |||||||| Sbjct 427310 ACAAAGACTTATCTTTGCCGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGATTACAA 427369 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||| || || ||||| || || ||| Sbjct 427370 TATCCAAAAAGAATCAACCCTCCAT 427394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124564309116