Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq27 116 4e-21 seq30 113 4e-20 seq12 98.7 9e-16 >seq27 Length=1864556 Score = 116 bits (128), Expect = 4e-21 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||||| || || ||||||||||| |||||||| Sbjct 1617504 CCACCTCTTAATCTGAGTACTAAATGTAATGTTGATTCTTTTTGAATGTTGTAATCAGAG 1617445 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || |||| |||| || |||||||| || Sbjct 1617444 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGATCGGGTGGA 1617385 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || |||| | ||| | |||||| | || ||||| Sbjct 1617384 ATACCTTCTTTAT-CTTGAATTTTGGCTTTGACATTTTCAATGGTGTCGGAACCTTCGAC 1617326 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTATT 127125 ||| | ||| | ||||| || || | |||||| |||||||| ||||| |||| |||| Sbjct 1617325 TTCTAAGGTAATAGTTTTACCAGTTAAAGTTTTAACAAAAATTTGCAT--TTTATATATT 1617268 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||| | || || ||||||||||| |||||||| Sbjct 1618188 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAGAG 1618129 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || |||| |||| || || ||||| || Sbjct 1618128 AGGGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCGGGTGGA 1618069 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| |||| | | ||| | ||| || | || || || Sbjct 1618068 ATACCTTCTTTGTCT-TGAATTTTGGCTTTTACATTTTCAATGGTATCTGAACCTTCAAC 1618010 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || |||| || ||||||||||| ||||| Sbjct 1618009 TTCAAGGGTAATAGTTTTACCAGTCAAGGTCTTTACAAAAATTTGCAT 1617962 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | ||||| || | || || ||||||||||| || ||||| Sbjct 1617732 CCACCTCTTAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAATCAGAT 1617673 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | || |||| ||||| |||||| | || | || || |||||||| || Sbjct 1617672 AATGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGA 1617613 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| |||| | | ||| | |||||| | || || || Sbjct 1617612 ATACCTTCTTTGTCT-TGAATTTTGGCTTTTACATTTTCAATGGTGTCTGAACCTTCAAC 1617554 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || || | || ||||||||||| ||||| Sbjct 1617553 TTCAAGGGTAATTGTTTTACCAGTTAAGGTCTTTACAAAAATTTGCAT 1617506 >seq30 Length=714265 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | ||||| |||||||| ||||||||||| | || ||| || || Sbjct 370252 ACTAAATGGAGGGTAGATTCTTTTTGGATATTGTAATCAGAGAGAGTACGACCGTCTTCC 370193 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| || ||| |||| || || || |||||||| || || || || ||||| | Sbjct 370192 AATTGTTTACCGGCGAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 370133 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | ||||| ||| || | || |||||||| | ||| | ||||| Sbjct 370132 ATTTTGGCCTTGACGTTTTCGATGGTATCTGAACCTTCGACTTCTAAGGTGATGGTTTTA 370073 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | |||||| ||||| || |||||| Sbjct 370072 CCAGTTAAAGTTTTAACAAAGATTTGCATG 370043 >seq12 Length=1224149 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | || || |||||||| ||||||||||| | || ||| || ||| Sbjct 427399 ACTAAATGGAGGGTTGATTCTTTTTGGATATTGTAATCAGAGAGGGTACGACCGTCTTCT 427340 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| || || |||| | || || |||||||| || || || || ||||| | Sbjct 427339 AATTGTTTACCGGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 427280 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | ||||| ||| || | || || ||||| | ||| | || || Sbjct 427279 ATTTTGGCCTTGACATTTTCGATGGTATCTGAACCTTCAACTTCTAAGGTAATGGTCTTA 427220 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | |||||| || ||||||||||| Sbjct 427219 CCAGTTAAAGTTTTAACGAAAATCTGCAT 427191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500479036960