Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq38 113 5e-20 seq27 107 2e-18 seq30 102 8e-17 >seq38 Length=878590 Score = 113 bits (124), Expect = 5e-20 Identities = 159/222 (72%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| ||| ||||||||| || || ||||| | || || |||||||| ||| | || || Sbjct 148174 TTTTAAACAATGCAAATCTTTGTTAAAACATTAACTGGTAAAACCATTACCCTAGAAGTT 148233 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 || | |||||| | | ||| | |||| ||||||| || ||||| || || || Sbjct 148234 GAAGGTTCCGACACCATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCA 148293 Query 38355 GCCGACCAACAGCGGCTCATTTACGCG-GGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 |||| ||||| | ||||||| ||| || ||||| | || || | || || ||| Sbjct 148294 CCCGATCAACAAAGACTCATTTTCGCTCGGTAAACAATTAGAAGATGGTCGTACTCTCTC 148353 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||| |||||||||||||| ||| | || || |||||||| || Sbjct 148354 CGATTACAACATCCAAAAAGAATCAACCCTCCATTTGGTACT 148395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || ||||| ||| | || || || | || Sbjct 148640 ATGCAAATTTTTGTTAAGACCTTAACTGGTAAGACCATTACCCTTGAAGTTGAAGGTTCC 148699 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || || | |||||||| || || || ||||||| Sbjct 148700 GACACCATTGAAAACG-TAAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCCGACCA 148758 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| ||| || ||||| | || || | || || || || ||||| Sbjct 148759 ACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 148818 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||| ||| | || || |||||||| || Sbjct 148819 CATCCAAAAAGAATCAACCCTCCATTTGGTACT 148851 >seq27 Length=1864556 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || |||||||| ||| | || || || | || Sbjct 1617734 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACCATTACCTTAGAAGTAGAAGGTTCC 1617793 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||| | |||||||| || || || ||||||| Sbjct 1617794 GACACCATTGAAAACG-TAAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCCGACCA 1617852 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| ||| || ||||| | || || | || || || || ||||| Sbjct 1617853 ACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 1617912 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || || ||||| || || | || ||||| || Sbjct 1617913 CATCCAAAAAGAATCAACCCTCCATTTAGTACTCAGATTAAGAGGTGG 1617960 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || ||||||||| || || ||||| | || || ||||| || ||| | || || || | Sbjct 1696169 AATAATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACTATTACCTTAGAAGTTGAAGG 1696110 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | |||| | | | ||||| | || | ||||| | || ||||| || || || ||| Sbjct 1696109 CTCAGACACCATTGAAAACG-TAAAGGCCAAAATTCAAGATAAAGAAGGTATCCCACCCG 1696051 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 ||||||| | || |||| ||| || ||||| | || |||| || || || ||| | Sbjct 1696050 ACCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCCGATT 1695991 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||||||||| ||| | || | ||||| || || | || ||||| || Sbjct 1695990 ATAACATCCAAAAAGAATCAACATTACATTTAGTACTCAGATTAAGAGGTGG 1695939 >seq30 Length=714265 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || |||||||||||| | || ||||| | | Sbjct 370044 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACCATCACCTTAGAAGTCGAAGGTTCA 370103 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| | || | ||||||| |||||||| || || || |||| || Sbjct 370104 GATACCATCGAAAACG-TCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCA 370162 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || ||||| |||| |||| || || ||| || ||||| Sbjct 370163 ACAACGTTTAATCTTCGCCGGTAAACAATTGGAAGACGGTCGTACTCTCTCTGATTACAA 370222 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| ||| | || || ||||| || || Sbjct 370223 TATCCAAAAAGAATCTACCCTCCATTTAGTACT 370255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172462383360