Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq36 235 6e-57 seq33 217 2e-51 seq27 113 5e-20 >seq36 Length=2033623 Score = 235 bits (260), Expect = 6e-57 Identities = 248/326 (76%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||||| |||| |||||||||||||| || || || || || || || |||||||| ||| Sbjct 729770 CTGTAAGTTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCT 729711 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 |||| ||| || |||||||| |||| | | | |||||||||||| || ||||| Sbjct 729710 TCTGGTATTTGAACTTCACTCATAAATTTAGTTGCTAGATTTTCATTAACAATACCATCT 729651 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 ||||||||||||||||||||||| ||| ||||||||||||| | |||| || Sbjct 729650 GAAGCTGCAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCATTTAACTTA 729591 Query 19432 TT---CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488 || ||| ||||| ||||| | | |||||| | ||||| ||||||| || || || Sbjct 729590 TTTTCCCATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCT 729531 Query 19489 TCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTA 19548 ||||||| ||||||||| |||||||| || | |||| || ||||||| |||||||||| Sbjct 729530 TCTGCTTGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCTA 729471 Query 19549 TTTTTATTTTCTTTAAGAATAGGTTC 19574 | || || ||||| | ||| ||||| Sbjct 729470 TCCTTGTTCTCTTTTAAAATTGGTTC 729445 Score = 150 bits (166), Expect = 2e-31 Identities = 183/248 (74%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| ||||| | ||||||||| || || || | ||| ||||||||||| || ||||| Sbjct 730121 CAAACAAGCAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGT 730062 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 ||||| ||||| | |||||||| |||| ||| || || ||| || ||| || Sbjct 730061 CAAACCTGGCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACTACCACTGAA 730002 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 || |||||||| || |||||||| || || | ||| ||| || || | | || Sbjct 730001 AAAGATACCTTCAACAGCTGCAAATGCCACCAATCTCTCTGCA-AATGATC-----TAGA 729948 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 || |||||| ||| ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 729947 ATTGATCCATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGC 729888 Query 19197 ATTAAATA 19204 ||| |||| Sbjct 729887 ATTGAATA 729880 >seq33 Length=884058 Score = 217 bits (240), Expect = 2e-51 Identities = 616/929 (66%), Gaps = 25/929 (3%) Strand=Plus/Minus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 ||| ||||| || || ||||| || || || || | |||| || ||||| || || || Sbjct 111203 TGCAATAGAGGCAAGGTTACAAACTGCGACTTCCTCTGGAGATGTGTATTGAATAATCTC 111144 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTA 47996 || ||| | ||| || || |||||||| || | ||||| ||| | ||| Sbjct 111143 AGTACACAAATTGGATGATGAAATGGTACCCAAGTTCTTTTGATTTGATTTC--TCATTA 111086 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 || || || ||||| || ||| ||||||| |||||||| || |||||||| | |||| Sbjct 111085 CAAGCATCTTTGTAGAGAATATAAGGTGTACCAGTTTCAATTTGAGATTCCACAATAGCA 111026 Query 48057 TTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTT-TATT--ATCATGTTCGTATTT 48112 ||| | | || | |||||| | ||| ||||||| | | | ||||| ||||| Sbjct 111025 AACCACAAA-TCTTGAGCCTTAACAACTTTTCTAGCTAATCCTGGAGTTTGTTCATATTT 110967 Query 48113 AGTATATAACTTCTCA-AATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTA 48170 ||| || || || ||||| || |||| || | | | | || || |||||| Sbjct 110966 GAGATA-AAGTTTTCTGAATTCCTCTCCATGG-CACTCTGCGAGACCTGGGGCCTCATTA 110909 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 ||||| | | |||||||| |||| || | |||||| | ||| ||| Sbjct 110908 GGACAAAAGAGGGACCAATCTTCATTTCCAGGAACACGTTCCATAAAGAGATCACAAATC 110849 Query 48231 CAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 ||||| || ||| ||||| || | || | | ||||| || ||| ||| | || || Sbjct 110848 CAAAGGGC-ATAGAATAAGTCACGAGCACGAATCTCTTCCTTACCATGATTTTTCTTTAG 110790 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || | || || | | |||||| |||||||| ||||| |||| ||| | ||||| Sbjct 110789 ATCCAAGAACTCAAAGACATCAGCGTGCCATGGCTCTAAGTATACTGCAAAAGCACCTTT 110730 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || ||| |||||||| |||| ||| | ||||| | |||| | || | ||||||||| Sbjct 110729 TCTCTTACCGCCTCCTTGGTCTACATAACGAGCAGTGTCGTTAAATACACGTAACATTGG 110670 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 || | |||||| || | || || ||||| ||||| | | ||| | || || Sbjct 110669 TACTAAACCATTGGAAGTTCCGTTAGTTCCACGGATATAGGATTGAGCAGCACGAATCTT 110610 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || || |||||| || ||||| || |||| || | || || |||| | || Sbjct 110609 GTGAACTGCAATACCAATTCCACCAGCAGATTTACTAATCAATGCGCATTGTTTCAAAGT 110550 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 ||| || || || || || ||| ||| |||| | | | |||||| ||||| || Sbjct 110549 ATCGTAGATACCGTCAATGGAATCCTCTTTCATTTGAACCAAGAAACAAGATGACATCTG 110490 Query 48590 CGG--ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 || ||| || || | ||| || ||||| |||| |||||| ||||| | ||| Sbjct 110489 AGGGAATGGT--GTACCAGCATTGAACAATGTAGGAGTAGCATGAGTAAACAACTTCATG 110432 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707 || | | || ||| || |||| | ||| | | || | ||||||||| ||||| Sbjct 110431 GAGAGCTTTTCATAAGTCTCAAAAGCAGCGTTCAAGTCAGTTCCATGTATACCAATAGAG 110372 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT---TTTCAAAAGA 48764 || | ||| ||||||| |||||||||||| ||||| | ||| || || ||| | Sbjct 110371 ACTCTCATCAACATATGTTGAGGTCTTTCCACAATGATACCATTGATACGTTGCAA---A 110315 Query 48765 TATGATTTTTCCAATGTTTTAAAACCAAA 48793 |||||| ||||||| || ||||||||||| Sbjct 110314 TATGATCTTTCCAAAGTCTTAAAACCAAA 110286 >seq27 Length=1864556 Score = 113 bits (124), Expect = 5e-20 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 65854 GTAATAGGAATAGATGAAGGCCAATTCTTTCAAGATATTGTAGAGTTTTGTGAAAATATG 65913 ||||| || || || ||||| || || || | |||| |||| || || |||| || | Sbjct 792284 GTAATTGGCATTGACGAAGGTCAGTTTTTCCCAGATGTTGTGGATTTCAGTGAGGATCTT 792225 Query 65914 GCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACCT 65973 || |||||||| ||||| || || ||||||| | |||||||||||| |||||||||| Sbjct 792224 GCCAATAAAGGTAAAATTGTAATCATTGCAGCTCTAGATGGAACATTTCAAAGAAAACCA 792165 Query 65974 TTTGGTAATGTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTGTG 66033 || | | |||||| | ||| | | || | || ||||| || || || Sbjct 792164 TTCCCAACCATTTTAAATCTCATTGGTAAAGCAGAGGATATTACCAAACTGACTGCAGTT 792105 Query 66034 TGTATGAAATGTTTTAAAGATGCATCTTTTTCAAAACGTATAGGTACAGAAACAGAGATA 66093 |||||| |||||||| ||||| | || |||||| | | | | | || | || Sbjct 792104 TGTATGGTTTGTTTTAATGATGCTGCATTCTCAAAAAGAACCGTTTCTGATGAATCTGTA 792045 Query 66094 GAAATTATAGGCGGTAAAGATAAATATCTATCTGTATGTAGGAAGTGTTATAATGAATAA 66153 ||| | || || |||| ||||||||| | || || ||||| | |||||| || || || Sbjct 792044 GAATTGATTGGTGGTACTGATAAATATATTTCAGTTTGTAGAAGTTGTTATCATAAAAAA 791985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108420576560