Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq27 107 1e-18 seq30 102 6e-17 seq31 93.3 3e-14 seq12 93.3 3e-14 >seq27 Length=1864556 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| ||||||||||| ||||||||||| || | ||| | || || Sbjct 1618170 ACTAAATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAGAGAGGGTACGACCATCTTCT 1618111 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || | || ||||| || | |||| || || ||||| | Sbjct 1618110 AATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCGGGTGGAATACCTTCTTTGTCTTGA 1618051 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | | ||||| | || || || | ||||| ||||| Sbjct 1618050 ATTTTGGCTTTTACATTTTCAATGGTATCTGAACCTTCAACTTCAAGGGTAATAGTTTTA 1617991 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||| ||||| Sbjct 1617990 CCAGTCAAGGTCTTTACAAAAATTTGCAT 1617962 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||||||||| || |||||||||| ||| | |||| || Sbjct 1617714 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAATCAGATAATGTTCTACCGTCTTCT 1617655 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || |||| |||||||| | |||| || || ||||| | Sbjct 1617654 AATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 1617595 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | | ||||| | || || || | ||||| ||||| Sbjct 1617594 ATTTTGGCTTTTACATTTTCAATGGTGTCTGAACCTTCAACTTCAAGGGTAATTGTTTTA 1617535 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||||||||| ||||| Sbjct 1617534 CCAGTTAAGGTCTTTACAAAAATTTGCAT 1617506 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||||| || ||||||||||| ||||||||||| ||| | ||| | || || Sbjct 1617486 ACTAAATGTAATGTTGATTCTTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCTTCT 1617427 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || | || |||||||| | |||| || || || || | Sbjct 1617426 AATTGTTTACCGGCAAAGATTAATCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 1617367 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || | || || || | ||||| ||||| Sbjct 1617366 ATTTTGGCTTTGACATTTTCAATGGTGTCGGAACCTTCGACTTCTAAGGTAATAGTTTTA 1617307 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||| |||||||| ||||| Sbjct 1617306 CCAGTTAAAGTTTTAACAAAAATTTGCAT 1617278 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||||| || ||||||||||| ||| | ||| | || || Sbjct 1617942 ACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCT 1617883 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||||||| || || |||| ||||| || | || | || || ||||| | Sbjct 1617882 AATTGTTTACCGGCGAAAATGAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGA 1617823 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||| | | | || || | || || || | ||||| ||||| Sbjct 1617822 ATTTTAGCCTTTACGTTTTCAATGGTGTCGGAACCTTCTACTTCTAAGGTAATGGTTTTA 1617763 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||| |||||||| ||||| Sbjct 1617762 CCAGTCAAAGTTTTAACAAAAATTTGCAT 1617734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||||||||| || || || |||| | ||| | | || || Sbjct 1695729 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCGGATAAAGTTCTACCATCTTCT 1695788 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || |||| ||||| || | || | || || || || | Sbjct 1695789 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGA 1695848 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | || ||||| | || || || | ||||| ||||| Sbjct 1695849 ATTTTGGCTTTTACATTTTCAATAGTATCTGAACCTTCAACTTCAAGGGTAATTGTTTTA 1695908 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| ||||| Sbjct 1695909 CCAGTTAAGGTCTTAACAAAAATTTGCAT 1695937 >seq30 Length=714265 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||||| |||||||| ||||| ||| | ||| | || ||| Sbjct 356300 ACTAAATGGAGAGTTGATTCTTTTTGGATATTGTAGTCAGAAAGAGTACGACCATCTTCC 356241 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || || || ||||| || | || | || || || || Sbjct 356240 AATTGTTTACCAGCAAAAATGAGACGTTGTTGGTCGGGTGGGATACCTTCTTTATCTTGG 356181 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || || | || ||||||| ||||| ||||| Sbjct 356180 ATCTTGGTCTTAACATTCTCTATAGTATCAGAACCTTCTACCTCCAAGGTAATTGTTTTA 356121 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||| |||||||| ||||| Sbjct 356120 CCTGTCAAAGTTTTAACAAAAATTTGCAT 356092 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || || |||||||||||||| ||||| ||| | ||| | || ||| Sbjct 356529 ACTAAATGGAGAGTTGATTCCTTTTGAATATTGTAGTCAGAGAGAGTACGACCATCTTCC 356470 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || |||| |||||||| | || | || || || || | Sbjct 356469 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTATCTTGA 356410 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA-TCGTTTT 48736 ||||| || ||| | | || ||||| | || || |||| |||| | ||||| Sbjct 356409 ATCTTGGTCTTGACATTCTCAATAGTATCTGATCCTTCAACTTCCAAGGTAATTGGTTTT 356350 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| |||||||| ||||| Sbjct 356349 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 356320 >seq31 Length=145395 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || |||||||| || ||||||||||| || || ||||||| | | ||| | || ||| Sbjct 8515 ACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTACGACCATCTTCC 8574 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || |||| ||||| || | || | ||||| || || Sbjct 8575 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCCTCTTTATCTTGG 8634 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| ||||| ||| | | | || || | || ||||| | ||||| || || Sbjct 8635 AT-TTTGGTTTTAACATTTTCAATGGTATCAGAACCTTCTACCTCTAAGGTAATTGTCTT 8693 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| |||||||| || ||||| Sbjct 8694 ACCAGTCAAAGTCTTTACAAATATTTGCAT 8723 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || ||||||||||| ||||||||||| ||| | ||| | || || Sbjct 7830 ACTAAATGGAGTGTTGATTCTTTTTGAATGTTGTAATCAGAGAGAGTACGACCATCCTCA 7889 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || ||||| ||||| || |||| ||||| || | || | || || ||||| | Sbjct 7890 AGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGA 7949 Query 48678 ATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| || |||||| | | | || || | || || |||| ||||| || || Sbjct 7950 AT-TTTGGTCTTTACATTTTCAATGGTATCAGAACCTTCAACTTCCAAAGTAATTGTCTT 8008 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| ||||| || ||||| Sbjct 8009 ACCAGTCAATGTTTTGACAAAGATTTGCAT 8038 >seq12 Length=1224149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||||| |||||||||||||| || | ||| |||| || Sbjct 427399 ACTAAATGGAGGGTTGATTCTTTTTGGATATTGTAATCAGAGAGGGTACGACCGTCTTCT 427340 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || |||| |||||||| | || | || || ||||| Sbjct 427339 AATTGTTTACCGGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 427280 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | ||||| | || || || | ||||| || || Sbjct 427279 ATTTTGGCCTTGACATTTTCGATGGTATCTGAACCTTCAACTTCTAAGGTAATGGTCTTA 427220 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||| || ||||||||||| Sbjct 427219 CCAGTTAAAGTTTTAACGAAAATCTGCAT 427191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937349295442