Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq28 131 4e-25 seq3 102 2e-16 >seq28 Length=1124265 Score = 131 bits (144), Expect = 4e-25 Identities = 319/477 (67%), Gaps = 15/477 (3%) Strand=Plus/Minus Query 150302 GCAGCAGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATT 150361 || |||||||||||| | ||||| | ||||| | || ||| || | | | || Sbjct 413206 GCTGCAGAAGGTAAATTGGATCCGGTCATTGGAAGAGATGATGAGATTCGTCGTGTTATA 413147 Query 150362 CAGATT-CTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGG 150420 ||| | || || | | ||| ||||| ||| | || |||||||||| ||||| || Sbjct 413146 -AGAGTACTGTCAAGAAGAACAAAAAACAATCCGGTTTTGATTGGTGAACCTGGTGTAGG 413088 Query 150421 TAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTC 150480 ||| || | | || || || || ||||| | || | | ||||||| | |||||| Sbjct 413087 TAAGACTGCAGTTGTAGAGGGTTTGGCACAGAGAATTGTTCGTGGTGATATACCAGATAA 413028 Query 150481 TATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTA 150540 | |||| | | || || || | ||| |||||||||| || | ||| ||| | || || Sbjct 413027 TTTGAATGCTCGTG---TTATTGCATTGGATATGGGTGCTTTGATTGCGGGTGCCAAATA 412971 Query 150541 TCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGAT 150598 ||||||||| || ||||| | | || || || || |||| | ||||| | || Sbjct 412970 TCGTGGTGATTTTGAAGAGAGATTAAAGGCAGTT--CTTAAAGAGGTGAAAGATAGTAAT 412913 Query 150599 GATG---TTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGC 150655 | || |||||||||| || |||||||| ||| || ||||||||||| |||| Sbjct 412912 GGTGGTATTATTCTGTTTATTGATGAAATTCATTTGGTTTTGGGTGCTGGTAAGACT--- 412856 Query 150656 GGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGT 150715 | ||| | ||||| ||| || | ||||| | || | |||||| ||||| Sbjct 412855 GATGGTGCAATGGATGCTGCTAATCTGCTCAAACCCATGTTGGCTAGAGGTGAACTTCGT 412796 Query 150716 GTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 || ||||| ||||| | ||||| ||| | ||| | ||||||| ||| ||||| Sbjct 412795 TGTATTGGTGCTACAACTTTGGATGAGTATAGAAAATATGTTGAAAAGGATCCAGCA 412739 >seq3 Length=1465623 Score = 102 bits (112), Expect = 2e-16 Identities = 254/380 (67%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 150402 TTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTA 150461 |||||||||| ||||||||||| || ||||| || || ||||| || | || | | Sbjct 784819 TTGGTGAACCTGGTGTTGGTAAGACTGCTATCGTAGAGGGTTTAGCTCAGAGAATTGTAA 784760 Query 150462 ATGGTGATGTTCCAGATTCTATGAAAGATGTTGA-AATTCTTTCTTTGAATATGGGTGCA 150520 |||| ||||| || || ||| ||||| || | | || | ||| || ||| Sbjct 784759 ATGGGGATGTACCTGACAGTAT-AAAGAACAAGAGAGTACTAACATTGGATTTGGCAAGT 784701 Query 150521 TTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTAC 150578 || ||||||| | |||| |||||||| || ||||| | || ||| ||| || Sbjct 784700 TTGGTTGCTGGTGCAAAGTTCCGTGGTGATTTTGAAGAGAGAATGAAGAGTATT--CTTA 784643 Query 150579 AAGAACT---AAAAGAACGCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTA 150635 |||| || | | | || | ||| ||||| |||| || |||||| | |||||| | Sbjct 784642 AAGATCTTGCACATTATCGTGGTGAGGTTATATTGTTTATAGATGAACTTCATACTTTGG 784583 Query 150636 TGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTC 150695 | |||||||||| ||| | ||| ||||| || |||||| ||||||| Sbjct 784582 TTGGTGCTGGTG---CTGTGGAAGGTGGAATGGATGCTAGTAATATGCTAAAACCACAGT 784526 Query 150696 TATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755 | || | ||||| | | | | | |||||||| || | ||||||||||||| | | Sbjct 784525 TGGCTAGAGGTGATCTACATTGCGTTGGTGCAACTACAACTGCTGAATATCGTAAATATA 784466 Query 150756 TTGAAAAAGATGCAGCACTA 150775 ||||||| ||| | ||| || Sbjct 784465 TTGAAAAGGATCCTGCATTA 784446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147589606010892