Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq33 239 1e-57 seq21 127 6e-24 seq3 107 6e-18 seq36 105 2e-17 seq10 100 8e-16 seq38 84.2 6e-11 >seq33 Length=884058 Score = 239 bits (264), Expect = 1e-57 Identities = 633/951 (67%), Gaps = 22/951 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645 ||||||| || || ||||| || || |||| || | | |||||| | ||||||| Sbjct 111201 CAATAGAGGCAAGGTTACAAACTGCGACTTCCTCTGGAGATG-TGTATTGAATAATCTCA 111143 Query 155646 CAGCACAGGTTAGAACTCTTGA--TGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703 |||| || || | ||| |||| || || ||||| || || ||||| |||| Sbjct 111142 GTACACAAATTGGA--TGATGAAATGGTACCCAAGTTCTTTTGATTTGATTTCTCATTAC 111085 Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTA 155763 ||||||| ||||| ||||| || || || || || || || || | |||| ||| | Sbjct 111084 AAGCATCTTTGTAGAGAATATAAGGTGTACCAGTTTCAATTTGAGATTCCACAATAGCAA 111025 Query 155764 GCCAGAGGTCACGGGCATTAA----TTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| | || | || |||| ||| || | | ||| | | |||||||| Sbjct 111024 ACCACAAATCTTGAGCCTTAACAACTTTTCTAGCTAATCCTGGAGTTTGT-TCATATTTG 110966 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 | ||| || ||| | | ||||| || | || || || || ||| || || || Sbjct 110965 AGATAAAGTTTTCTGAATTCCTCTCCATGGCACTCTGCGAGACCTGGGGCCTCATTAGGA 110906 Query 155880 CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939 ||||| || |||||| || ||| || ||||| |||||||| | ||||| |||| Sbjct 110905 CAAAAGAGGGACCAATCTTCATTTCCAGGAACACGTTCCATAAAGAGATCACAAATCCAA 110846 Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999 | |||||||| | ||| | || ||| || | || ||||| ||| ||| || Sbjct 110845 AGGGCATAGAATAAGTCACGAGCACGAATCTCTTCCTTACCATGATTTTTCTTTAGATCC 110786 Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 ||||| || | ||||| || |||||| | || | |||||| ||| || ||| Sbjct 110785 AAGAACTCAAAGACATCAGCGTGCCATGGCTCTAAGTATACTGCAAAAGCACCTTTTCTC 110726 Query 156060 TT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 || ||| || || |||||||| |||||||| | || || |||| || ||| || | Sbjct 110725 TTACCGCCTCCTTGGTCTACATAACGAGCAGTGTCGTTAAATACACGTAACATTGGTACT 110666 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 | |||||||||||| || || ||||| || |||| || || | |||| || ||| Sbjct 110665 AAACCATTGGAAGTTCCGTTAGTTCCACGGATATAGGATTGAGCAGCACGAATCTTGTGA 110606 Query 156177 ATATGTAGT-CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATT 156235 | || | | ||||| ||||| | ||||| ||| ||||||| || | ||||| Sbjct 110605 A-CTGCAATACCAATTCCACCAGCAGATTTACTAATCAATGCGCATTGTTTCAAAGTATC 110547 Query 156236 GAAAATACCTTCAATAGAATCATCTTCCA-TTGATAGTAGATAGCACGAACTTAATTGAG 156294 | | ||||| ||||| ||||| |||| || |||| ||| | || || | |||| Sbjct 110546 GTAGATACCGTCAATGGAATCCTCTTTCATTTGAACCAAGA-AACAAGATGACATCTGAG 110488 Query 156295 GTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACA 156354 | |||||| ||||| ||||| | |||||| || |||||| |||| |||| | || | Sbjct 110487 GGAATGGTGTACCAGCATTGAACAATGTAGGAGTAGCATGAGTAAACAACTTCATGGAGA 110428 Query 156355 TATAATCGTATGTCTCCTTA--ATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGAC 156412 | || || ||||| | | | | ||||| | || || || |||| |||||||| Sbjct 110427 GCTTTTCATAAGTCTCAAAAGCAGCGT-TCAAG-TCAGTTCCATGTATACCAATAGAGAC 110370 Query 156413 CCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGC 156472 |||||| ||||||| ||||| | || ||||| | |||| || || | | |||| Sbjct 110369 TCTCATCAACATATGTTGAGGTCTTTCCACAATGATACCATTGATACGTTGCAAATATGA 110310 Query 156473 GCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523 | ||||| ||| ||||| || || ||||| | ||||||||| || || Sbjct 110309 TCTTTCCAAAGTCTTAAAACCAAAGAAATCATAGTCAAAATCACGTTTATA 110259 >seq21 Length=1098390 Score = 127 bits (140), Expect = 6e-24 Identities = 220/317 (69%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||||| ||||||||||| ||||| || | | ||| ||| ||| | | | || | Sbjct 134349 TACCAATGGCATCAATTTCATCAATAAACACTATACAAGGACTATTCTTTTTAGCCTGTT 134290 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| | || || ||||| | || || | ||||||| ||||||| ||||| || ||| Sbjct 134289 CAAAAAGGTCCCTAACACGAGCTGGACCCACACCAACAAACATTTCAACAAAATCCGAAC 134230 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 || || | || | |||| |||||| | || ||||| || ||| | || || |||||| Sbjct 134229 CGC-TAGTAGAGAAAAATGGTACATTCGACTCACCTGCAACAGCCTTTGCAAGCAGTGTC 134171 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| ||||| |||||||| |||| | | ||| | || | |||||| ||| Sbjct 134170 TTACCAGTTCCTGGTGGTCCAATCAATATAGCACCCCTAGGAATTTTTGCTCCAATTTTT 134111 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||| ||| | || | || | |||| ||| |||| ||| |||||||||| Sbjct 134110 TGATATTTGGTTGGGTTTTTGAGGAAATTGACAAATTCTTCAATTTCGACTTTTGCCTCA 134051 Query 289327 TCACATCCTGCTACATC 289343 | | || |||||||| Sbjct 134050 CCCAAGCCAGCTACATC 134034 >seq3 Length=1465623 Score = 107 bits (118), Expect = 6e-18 Identities = 212/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 302569 ATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACA 302628 || |||||||| ||| | | ||| | |||||||| ||||| || || |||||| Sbjct 130416 ATATCTTCCATTGCCTTTACAAGACGTCTTTGAATATACCCAGTCTCTGAGGTCTTTACA 130475 Query 302629 GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT 302688 ||||||||||| | ||| ||||||||||||||||||||||||| | ||||| ||| Sbjct 130476 GCTGTATCAATGATACCTTCACGACCACCCATAGCATGGAAGAAGAACTCTTGTGGTGTC 130535 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GGGC--GAATCGTCGAAC 302745 | || | | |||| ||||||| ||||| | || |||| |||| || Sbjct 130536 AAACCTGATAAATAGGAATTCTCAACAAAACCTCTACTTTCAGGGCCATAATCATC---T 130592 Query 302746 TTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACG 302805 || || || ||||| | || ||||| | | || | || ||||| || || || ||| Sbjct 130593 TTTGTGAAATGTGGTAATGTTCTGTTTTGGAAACCAAAGGGAATACGTTTACCTTCGACG 130652 Query 302806 TTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCA 302865 ||||| || || | || | |||||||| || || || | | | || || ||| Sbjct 130653 TTCTGTTGACCTACACAAGCCATCATCTGAGAGATGTTAATAAAAGAACCTTTACTACCA 130712 Query 302866 GCATTTACCAT 302876 ||||| ||||| Sbjct 130713 GCATTGACCAT 130723 >seq36 Length=2033623 Score = 105 bits (116), Expect = 2e-17 Identities = 200/291 (69%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 133071 ATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAG 133129 |||| |||||| | || |||||||| || || || ||| | ||||||||| || ||| Sbjct 729470 ATAGATTTGTTCTATTTCCAATTAAATACCCAGACATATGGAATATGTATAAACAAGCAG 729529 Query 133130 CAAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAA 133189 ||| | ||| ||||| || || | |||||| ||| || | |||||| Sbjct 729530 -AAGCCTCATTCTGGACAGCAGAAGAGATTGATTTAGCCAGTGATATCAATGAATGGGAA 729588 Query 133190 GCCC---TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCG 133246 | | || ||||||||||||| ||||| | | ||||| |||||||| || Sbjct 729589 AATAAGTTAAATGAAAATGAAAAACATTTCATTTCCAATGTATTAGCATTTTTTGCAGCT 729648 Query 133247 AGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCC 133306 |||||||||||| ||||||| ||| ||| |||||| | ||||||||| | | Sbjct 729649 TCAGATGGTATTGTTAATGAAAATCTAGCAACTAAATTTATGAGTGAAGTTCAAATACCA 729708 Query 133307 GAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT 133357 |||||| | || ||||| | || ||||| || |||||||| |||||| Sbjct 729709 GAAGCCAGATGTTTCTATGGTTTCCAAATTGCCATTGAAAATATTCATTCT 729759 >seq10 Length=701017 Score = 100 bits (110), Expect = 8e-16 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||||||||||||||| || || || || || | ||| || | | ||| || | Sbjct 599439 TACCAACAGCATCAATCTCATCGATAAATATGATACAAGGTGCCGATGCTCTTGCCTCTT 599380 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| ||||| |||||||| |||| |||| ||| ||| |||| || | || || || Sbjct 599379 TAAACAATTCCCTTACACGCGATGGACCAACACCTACAAACATCTCAATGAAATCTGATC 599320 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | || | | || |||| ||| ||| || ||||| ||| | || || ||||||| Sbjct 599319 CTGAAATTGTAAAAAATGCAACACCTGCCTCTCCTGCAGTTGCTTTAGCAAGCAGTGTCT 599260 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 |||| || || || || || | |||| | | || ||||| | | | || || || | Sbjct 599259 TACCAGTACCTGGAGGACCTACCAATATAGCACCTTTTGGAATTCTAGCTCC--CAATTT 599202 Query 289268 --TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 |||| || | || |||||| || | |||| |||| || || | ||| || || Sbjct 599201 GGTATACTTTTGTGGATTCTTTAGGAACTGAACAAATTCCATAATCTCTTCTTTGGCTTC 599142 Query 289326 ATCACATCCTGCTACATCAGCAAAAGTA 289353 ||| | ||||||||||| ||||||| Sbjct 599141 ATCTAAACCTGCTACATCTTTAAAAGTA 599114 >seq38 Length=878590 Score = 84.2 bits (92), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||| | |||||| | |||||| ||||| | ||||||||||||| | | || |||||||| Sbjct 493845 AATGAGACAATCTCTCTCCATCTCACCAAGACGAAGACCACCACCTCTTGCTCTACCCTC 493904 Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615 | ||| ||||| || || |||| ||||||| | | || ||| ||||| | Sbjct 493905 AGTAGGTTGACGGGTAAGTGTAACGGTAGGACCTCTAGCACGAGCATGCATTTTATCCAT 493964 Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAAGGCATTTG 251675 |||||||| || || ||| |||||| || || | |||||| ||| | | | Sbjct 493965 AACCATATGTTTAAGTTTCTGATAGAATATAGGTCCAAAGAAGATAAAGCAAGCTAATGG 494024 Query 251676 CTCTCCAGTTA 251686 ||| ||||||| Sbjct 494025 CTCACCAGTTA 494035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816581686198