Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq27 111 1e-19 seq30 93.3 3e-14 >seq27 Length=1864556 Score = 111 bits (122), Expect = 1e-19 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || ||||| || ||||| |||||| | ||| || | | Sbjct 1695937 ATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACAATTACCCTTGAAGTTGAAGGTTCA 1695878 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | |||||| || ||| ||||||||||| | || || || Sbjct 1695877 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAA 1695818 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || |||||||||| ||| |||||||| | || || | | ||| | | ||||| ||| Sbjct 1695817 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCCGACTATAAC 1695758 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT--AATAAAA 107793 |||||||| || || || | ||| |||| | ||||| |||| || ||| ||||||| Sbjct 1695757 ATTCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTAAGAGGTGGTAATTAAATAAAA 1695698 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || ||||| || ||||| |||||| | ||| || | | Sbjct 1617506 ATGCAAATTTTTGTAAAGACCTTAACTGGTAAAACAATTACCCTTGAAGTTGAAGGTTCA 1617565 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | |||||| || ||| || |||||||| | || ||||| Sbjct 1617566 GACACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 1617625 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || |||||||||| || |||||||| | || |||| | |||| | | || || ||| Sbjct 1617626 CAAAGACTTATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACATTATCTGATTATAAC 1617685 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || || || | ||| |||| | ||||| |||| || Sbjct 1617686 ATTCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTAAGAGGTGG 1617732 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 |||||||||||||||||| ||||||||||| || ||||| |||||| | ||| || | Sbjct 1617274 TAAAATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAAGG 1617333 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | ||| || | | | || ||| || ||| ||||||||||| | || || Sbjct 1617334 TTCCGACACCATTGAAAATGTCAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCCGA 1617393 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||| || ||| | || | ||| |||||||| | || || | || | | || || Sbjct 1617394 TCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTA 1617453 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||| || || || || || | || | ||||| |||| || Sbjct 1617454 CAACATTCAAAAAGAATCAACATTACATTTAGTACTCAGATTAAGAGGTGG 1617504 >seq30 Length=714265 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCA-TTACCGTCGAAACGGAGGCTGG 107614 |||||||||||||||||||| || || || ||||||| ||||| | ||| || | Sbjct 356320 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCAATTACCTTGGAAGTTGAAGGATC 356379 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || |||||| ||||||||||| | || ||||| Sbjct 356380 AGATACTATTGAGAATGTCAAGACCAAGATTCAAGATAAAGAAGGTATCCCACCCGATCA 356439 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || |||||||||| ||| |||||||| |||| || | || | | |||||||| Sbjct 356440 ACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTACAA 356499 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||| || || Sbjct 356500 TATTCAAAAGGAATCAAC 356517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876537489206