Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq36 168 9e-37 seq33 149 9e-31 seq27 104 3e-17 >seq36 Length=2033623 Score = 168 bits (186), Expect = 9e-37 Identities = 214/294 (73%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| ||||| || |||||||| || || || || || || |||||||| ||||| | | Sbjct 729763 TTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTGGTA 729704 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 |||| || || |||| | || | ||||||||| || || ||||| ||| | Sbjct 729703 TTTGAACTTCACTCATAAATTTAGTTGCTAGATTTTCATTAACAATACCATCTGAAGCTG 729644 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CC 40088 |||||||||| ||||||| ||| |||| |||||||| | || ||||| || Sbjct 729643 CAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCATTTAACTTATTTTCCC 729584 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 | ||||||||||| | | || ||| | ||||| |||||||| || || || ||||| | Sbjct 729583 ATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCTGCTT 729524 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 ||| ||||| |||||||| || | |||| |||||||| | ||||||||||| Sbjct 729523 GTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCTAT 729470 Score = 161 bits (178), Expect = 1e-34 Identities = 398/590 (67%), Gaps = 19/590 (3%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTC--TCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 39383 ||||| |||||| | || || | || ||||| || | ||| | || ||| || || Sbjct 730408 TTTTGATATTCAGCTACT--TTACCTTCAAAAAAGTTTGATTTTCTTTGCAAAGAAATCA 730351 Query 39384 TTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAA 39443 ||||||| |||| || ||||| || | |||| | | ||||| | || || || | Sbjct 730350 TTTCCATCCAATCGAAAGGATTGGTAGAATTAAAAATCTTTTTGTAACC-AAGAGAGACA 730292 Query 39444 TCAAT-CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | | | |||||| ||| || |||||| | ||| | | ||||| || ||| Sbjct 730291 ACTAGACGATCTGCGCAAAACTCAATGTATTGTGACATGGCTCTGCTGTTCATACCAATG 730232 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG-ATGTCTACGGCCTCTGTTAT 39561 || | ||||||||||| || |||| ||| || ||||| ||| | || || ||| | || Sbjct 730231 AGATCAACTGGTAGAGATTCAGTTACAAATTCCTTTTCACATG-CAACAGCATCTTTGAT 730173 Query 39562 TAT--CGATGTT-ACTACCTCATC-ACTCGGTGGATGCAATAAATGTTTAAACATTAAGC 39617 || | || | | | ||||| | || | | | | | ||| | | || | Sbjct 730172 AATGTCTATAATGATTTTTTCATCTAATCTATTTACGAGTTTACTGT----AGAGCAAAC 730117 Query 39618 AGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTC 39677 | || |||| ||||||||| || ||||| | |||||| ||||| || || ||||| | | Sbjct 730116 AAGCAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTCAAAC 730057 Query 39678 CAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737 | ||||||| ||| | || || |||||||| |||| | ||| ||| || |||| Sbjct 730056 CTGGCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACTACCACTGAAAAAGA 729997 Query 39738 TGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCC 39797 | ||||| || ||||||||||| || | ||||||| | || | | | | || |||| Sbjct 729996 TACCTTCAACAGCTGCAAATGCCACCAATCTCTCT--GCAAATGATCT-AGAATTGATCC 729940 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | || ||||| || || ||||| || ||||| || || |||||||||||||| || | Sbjct 729939 ATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGCATTGAATA 729880 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 | | ||||| || | ||||| ||||||||| ||||| |||||| Sbjct 729879 ATTTAGCTTTTTGTTCTGGGTTTTTAATATATGTATCAATTAAAAGACTA 729830 >seq33 Length=884058 Score = 149 bits (164), Expect = 9e-31 Identities = 593/923 (64%), Gaps = 13/923 (1%) Strand=Plus/Minus Query 69270 TGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTC 69329 ||| | ||| || || ||||||||||| || || | | | || ||||| || ||||| Sbjct 111203 TGCAATAGAGGCAAGGTTACAAACTGCGACTTCCTCTGGAGATGTGTATTGAATAATCTC 111144 Query 69330 TGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACA 69389 ||||| | ||| || || || |||| || | ||||| || | ||||| Sbjct 111143 AGTACACAAATTGGATGATGAAATGGTACCCAAGTTCTTTTGATTTGATTTCTCATTACA 111084 Query 69390 GGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTT 69449 || || ||||| |||||| | || |||||||||||||| |||||||| | ||||| Sbjct 111083 AGCATCTTTGTAGAGAATATAAGGTGTACCAGTTTCAATTTGAGATTCCACAATAGCAAA 111024 Query 69450 CCAAACGACCCTAGCATTTATTAC-GGTCTTG-TAACGCTTCTCTTT-TTCATATTGTGT 69506 ||| | | ||| || | || ||| | ||| || ||| |||||||| Sbjct 111023 CCACAAATCTTGAGCCTTAACAACTTTTCTAGCTAATCCTGGAGTTTGTTCATATTTGAG 110964 Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||| || | |||||| ||||| || | | || || ||||| ||||| Sbjct 110963 ATAAAGTTTTCTGAATTCCTCTCCATGGCACTCTGCGAGACCTGGGGCCTCATTAGGACA 110904 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAG 69626 | | ||||| | |||| | ||| |||| |||||| ||||| ||||||||| Sbjct 110903 AAAGAGGGACCAATCTTCATTTCCAGGAACACGTTCCATAAAGAGATCACAAATCCAAAG 110844 Query 69627 AGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA 69685 || ||| || | || | | | | | ||||| || || |||||| || ||||| | Sbjct 110843 GGC-ATAGAATAAGTCACGAGCACGAATCTCTTCCTTACCATGATTTTTCTTTAGATCCA 110785 Query 69686 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTT 69745 ||||| | | ||||| |||||||| |||| |||| || | | || || | Sbjct 110784 AGAACTCAAAGACATCAGCGTGCCATGGCTCTAAGTATACTGCAAAAGCACCTTTTCTCT 110725 Query 69746 TATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 || ||||| || |||| || | ||||||| ||| | || | | ||| || | | Sbjct 110724 TACCGCCTCCTTGGTCTACATAACGAGCAGTGTCGTTAAATACACGTAACATTGGTACTA 110665 Query 69806 TACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAA 69865 |||||| || | || || |||||| ||||| | || ||||| || || Sbjct 110664 AACCATTGGAAGTTCCGTTAGTTCCACGGATATAGGATTGAGCAGCACGAATCTTGTGAA 110605 Query 69866 TAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCAT 69925 | | ||| ||||| || || |||| || | || || ||||||| || || | Sbjct 110604 CTGCAATACCAATTCCACCAGCAGATTTACTAATCAATGCGCATTGTTTCAAAGTATCGT 110545 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAA-GAAGAAAACAGCTAGACATTTGATGA 69984 | ||||| || ||| ||| ||| |||| | || |||||| || | ||||| ||| | Sbjct 110544 AGATACCGTCAATGGAATCCTCTTTCATTTGAACCAAGAAACAAGAT-GACATCTGAGGG 110486 Query 69985 TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGC 70044 | || || ||||| || |||||||||| || ||||| ||| | || || ||| Sbjct 110485 AATGGTGTACCAGCATTGAACAATGTAGGAGTAGCATGAGTAAACAACTTCATGGAGAGC 110426 Query 70045 AGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGC 70104 | || || |||| ||| | | | || ||| || || || | ||| | | Sbjct 110425 TTTTCATAAGTCTCAAAAGCAGCGTTCAAGTCAGTTCCATGTATACCAATAGAGACTCTC 110366 Query 70105 ATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT---TTTCAACAGGTATGAT 70161 ||||||||||| ||||||| ||| || | || ||| || || ||| |||||| Sbjct 110365 ATCAACATATGTTGAGGTCTTTCCACAATGATACCATTGATACGTTGCAA---ATATGAT 110309 Query 70162 TTTTCCAGAGTTTTAAACCCAAA 70184 |||||| ||| ||||| ||||| Sbjct 110308 CTTTCCAAAGTCTTAAAACCAAA 110286 Score = 140 bits (154), Expect = 4e-28 Identities = 458/700 (65%), Gaps = 25/700 (4%) Strand=Plus/Minus Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT-AATACTCTTTTGAGGAATTT 68572 ||| || || ||||| ||||| || || ||||| | || || |||||| | ||| | Sbjct 112001 TTGGTCAATAAAAGCACCTCTGTCAGCAGCCATATCAATCAAGGCTCTTT-GTTTAATCT 111943 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG-CTCG--TATTTTGAATGG 68629 |||||| ||||| ||| ||||| | ||| ||||||| || | ||||||||| | Sbjct 111942 CCCAAACTGTCTTGTAAAGTTGTTTCAAATCCTCTGGAATCTCTGGAATATTTTGAACAG 111883 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATT--CCACAATTTTCTCTCCGT 68687 | |||| | | |||||| | || || | || |||| ||||| | |||| | Sbjct 111882 AACCACGGTGTGCTATAATCTTGTTTTTCAAGTC--CATTGACCACAGTCCAAGCTCCAT 111825 Query 68688 TAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGT 68747 | | | ||| | ||| ||||| ||| |||||| || | ||| ||||| | | Sbjct 111824 AAGATCAGAAAGCAATTGCTTATTAATAATTGTAAATTCACCTGCTAAGACTCTTCTGGA 111765 Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 || || ||||| || |||||||| | || ||||| || || | ||||||| || || Sbjct 111764 ATATATGTTACTAGTGTATGGTTCAAAAGCCTCATTGTTACCTAAAATTTGACTGGTGGA 111705 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 || || ||||| || || | || | ||||||||||| ||| | ||| | || Sbjct 111704 GGCTGTGGGCATTGGGGCTATTAAAAGTGAGTTTCTAAGACCGTGTTTGGCGATATCTTC 111645 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 || || |||||||||| |||| |||| | ||| ||| ||| | ||||||||| || Sbjct 111644 CTTGAGTTGTTTCCAATTCCAACGATCGGTTGGAGTGACACCCCACATATCGTATTGGAG 111585 Query 68928 AATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAG 68987 || || | |||||| || || | ||| | ||| ||||| |||| | ||| || Sbjct 111584 TATACCTTGACTTGCTGGAGAACCTTGGAATGATGAATAGGGTCCATCCTTATGAGCGAG 111525 Query 68988 TTCACAACT--TGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA 69045 || | ||| || ||| || | | || || || ||| |||||| |||| | | Sbjct 111524 TT--CTACTGAGGCGCTTAAAGCTGCAAAGTAGATAGTCTCGGAAATCTCAATATTCA-A 111468 Query 69046 TCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAA----TA--AATGCATCTGCC 69099 | | | || || | || | || ||| | ||| || || |||| || Sbjct 111467 TTTAG-----CTGCACCTGTGGATTCAAAAGGTAGACGAAGGGCTAAGAAAACATCAGCA 111413 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 | || |||| |||||||| || ||||| || | || | | | ||||||||| Sbjct 111412 AGACCTTGAATACCAATACCAATTGGTCTGTGACGGAGGTTGCTAGTCTTAGCTTCTGGG 111353 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC 69199 | ||||||||||| |||| ||||| || || ||||||| Sbjct 111352 ACTGGATAATAATTTCTATCAATAATCTTGTTGAGATTTC 111313 >seq27 Length=1864556 Score = 104 bits (114), Expect = 3e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 87322 GTGATAGGTATAGACGAGGGTCAGTTCTTCCCAGACATAGTGGAATTCTGCGAATACATG 87381 || || || || ||||| |||||||| |||||||| | ||||| ||| | || | | Sbjct 792284 GTAATTGGCATTGACGAAGGTCAGTTTTTCCCAGATGTTGTGGATTTCAGTGAGGATCTT 792225 Query 87382 GCAAACAATGGAAAAATAGTTATAGTGGCTGCATTAGATGGAACATTTCAACGAAAACCA 87441 || || || || ||||| || || | || || ||||||||||||||||| |||||||| Sbjct 792224 GCCAATAAAGGTAAAATTGTAATCATTGCAGCTCTAGATGGAACATTTCAAAGAAAACCA 792165 Query 87442 TTTACAACTATTTCGAATCTTATTCCGTTATCCGAAATGGTAGTA--AAACTGACAGCGG 87499 || |||| |||| ||||| ||| | || | | | || || |||||||| || | Sbjct 792164 TTCCCAACCATTTTAAATCTCATT--GGTAAAGCAGAGGATATTACCAAACTGACTGCAG 792107 Query 87500 TATGTATGAAATGCTTTAAAGAGGCGTCGTTTTCTAAA 87537 | |||||| || ||||| || || | || || ||| Sbjct 792106 TTTGTATGGTTTGTTTTAATGATGCTGCATTCTCAAAA 792069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908336336560