Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq36 163 2e-35 seq34 93.3 3e-14 >seq36 Length=2033623 Score = 163 bits (180), Expect = 2e-35 Identities = 219/302 (73%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| ||||| | ||||||||| |||| | ||||||||| | ||||| ||| ||||| | Sbjct 729471 TAGATTTGTTCTATTTCCAATTAAATACCCAGACATATGGAATATGTATAAACAAGCAGA 729530 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC---ATTGGAT 43812 || ||||| |||||||||||||| ||||||| | | || || || || ||| Sbjct 729531 AGCCTCATTCTGGACAGCAGAAGAGATTGATTTAGCCAGTGA--TATCAATGAATGGGAA 729588 Query 43813 TGCA--TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCG 43870 | ||||| | | ||||||||||| || || || || || |||||||| || Sbjct 729589 AATAAGTTAAATGAAAATGAAAAACATTTCATTTCCAATGTATTAGCATTTTTTGCAGCT 729648 Query 43871 AGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCA 43930 || || || || ||||||||| | | | | ||| | ||||||||| ||||| Sbjct 729649 TCAGATGGTATTGTTAATGAAAATCTAGCAACTAAATTTATGAGTGAAGTTCAAATACCA 729708 Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 ||||| ||||||| ||||| || ||||||||||| |||||||||||||| |||| ||| Sbjct 729709 GAAGCCAGATGTTTCTATGGTTTCCAAATTGCCATTGAAAATATTCATTCTGAAACTTAC 729768 Query 43991 AG 43992 || Sbjct 729769 AG 729770 Score = 156 bits (172), Expect = 3e-33 Identities = 220/298 (74%), Gaps = 11/298 (4%) Strand=Plus/Plus Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGG-GCACGAGAAGCATCGATTGTTTAATGC 44049 |||||| | || ||||| || || ||| | | || | |||| | ||| || ||||| Sbjct 729831 AGTCTTTTAATTGATACATATATTAAAAACCCAGAACAAAAAGC-TAAATTATTCAATGC 729889 Query 44050 GATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT 44108 |||||||| | || || | | ||| | || ||||| |||||| | | |||||| |||| Sbjct 729890 TATAGAAACTATTCCATGTG-TGAAAAAGAAGGCAGAATGGGCCTTGAGATGGATCAATT 729948 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 | | ||| | |||| ||| || | || || ||||||| ||| ||||| || || ||| Sbjct 729949 CTA--GAT-CATTTGCAGAGAGATTGGTGGCATTTGCAGCTGTTGAAGGTATCTT--TTT 730003 Query 44169 CAG-GATCGTTTGCGG-CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 ||| | | |||| | |||| |||||| |||||||| ||||||| ||||| || ||||| Sbjct 730004 CAGTGGTAGTTTCTGTTCCATCTTTTGGCTAAAGAAAAGAGGTTTAATGCCAGGTTTGAC 730063 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || ||||| || || |||||||||||||| ||||||| | |||||||| ||| Sbjct 730064 ATTCTCCAATGAATTGATTAGTCGTGATGAAGGTCTACATTGTAACTTTGCTTGTTTG 730121 >seq34 Length=1536112 Score = 93.3 bits (102), Expect = 3e-14 Identities = 291/444 (66%), Gaps = 20/444 (5%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAAC-ATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTG 19376 |||| | | ||||| ||||||| ||||| | || | | | ||||| ||||| ||| Sbjct 841846 ATTACAAAGTTGGG-TGTAAACCATGTTAGAGGTATGCTATTGTATGGACCACCAGGTAC 841788 Query 19377 TGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAAC---AACCTCCCAA 19433 ||| || ||| | ||||| ||| | || |||| | |||| | ||||| || Sbjct 841787 TGGTAAGACACTCATTGCCAGACAGATTGGTAAGATGCTTAATGGTCGTGAACCT---AA 841731 Query 19434 AATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACG 19493 | | || ||||| ||| || |||||||||||||| || ||| | |||||| | Sbjct 841730 ACTCGTTTCAGGTCCATCAATTTTGGATAAATATGTAGGTGGTTCTGAAAACAATGTAAG 841671 Query 19494 ACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT---TT 19550 | | ||| || |||||| ||||| || | |||| | ||| ||| || Sbjct 841670 AATGCTCTTTAGAGAAGCTGAAATTGAACAGAAGCAAA-AGGGTGAAAA--TTCAGGATT 841614 Query 19551 GCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT------GG 19604 || || || || || ||||| ||||| || || || ||| |||||| | || Sbjct 841613 ACATATCATCATTCTTGATGAGTTGGATGCCATTTGCAAGACTAGAGGTACCAGACAAGG 841554 Query 19605 TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAA 19664 || ||| ||| ||| |||| ||||||||||| || ||| | || ||||| | Sbjct 841553 TGACTCTGGTGTAGGTGATTCTGTAGTCAATCAACTTCTAGCAATGATTGATGGTGTGGA 841494 Query 19665 CCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGC 19724 || |||||||| ||||| ||||| |||||||||||| ||| | || || || Sbjct 841493 ATCTCTCAATAATATCTTAGTCATTGGTATGACTAATAGAAAAGAAATGATTGATGATGC 841434 Query 19725 CTTATTACGACCCGGTCGGTTGGA 19748 | || |||| ||||| ||||| Sbjct 841433 TCTTTTGAGACCTGGTCGTTTGGA 841410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455738424270