Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq33 111 2e-19 seq21 84.2 3e-11 >seq33 Length=884058 Score = 111 bits (122), Expect = 2e-19 Identities = 235/344 (68%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 110470 TTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATATCAATGACATC-CTTCATCTTAATT 110527 ||||||||| || || || | || || ||||||||||| | | ||| | ||||| Sbjct 112001 TTGGTCAATAAAAGCACCTCTGTCA-GCAGCCATATCAATCAAGGCTCTTTGT-TTAATC 111944 Query 110528 TCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATG 110587 ||||||||||| || || | || | ||| ||||| || |||| ||||| || | Sbjct 111943 TCCCAAACTGTCTTGTAAAGTTGTTTCAAATCCTCTGGAATCTCTGGAATATTTTGAACA 111884 Query 110588 GAACCCCCC---GCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 ||||| | || | | | || | |||| ||| | ||||| || |||| || | Sbjct 111883 GAACCACGGTGTGCTATAATCTTG---TTTTTCAAGTCCATTGACCACAGTCCAAGCTCC 111827 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 | || ||| | | ||||| || | ||| ||| |||||||| | | |||||| Sbjct 111826 ATAAGATCAGAAAGCAATTGCTTATTAATAATTGTAAATTCACCTGCTAAGACTCTTCTG 111767 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 || ||||| | |||||||||||||| ||||| ||||| || ||||| |||| Sbjct 111766 GAATATATGTTACTAGTGTATGGTTCAAAAGCCTCATTGTTACCTAAAATTTGACTGGTG 111707 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 110808 |||||||| |||||||| || || ||||| ||| | |||||| Sbjct 111706 GAGGCTGTGGGCATTGGGGCTATTAAAAGTGAGTTTCTAAGACC 111663 >seq21 Length=1098390 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/263 (68%), Gaps = 21/263 (8%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || |||||||| |||||||| || |||| ||||||| | || | | | || Sbjct 134491 TCCAGGATATCAGGTCGATTAGTAGCAGCAAATACCACAACATCTTTCAGAGTCTGGAAC 134432 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTG---CTGGC 11599 |||||||| ||| ||||| ||||| | || | |||||||||||| || | ||| Sbjct 134431 CCATCCATTTCGACAAGTAACTGATTGAGAGTATTTTCTCTCTCATCGTTGGACCCTGAG 134372 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCC-ACC----GCATCAATCTCATCAATGAAGACAA 11654 | || ||| | || | | ||||||| ||| |||||||| |||||||| || || | Sbjct 134371 A-AC--CCACCTCTTCCT--CTTGCCCTACCAATGGCATCAATTTCATCAATAAACACTA 134317 Query 11655 TACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCC 11710 |||| || || |||| || | |||||| || || | ||| | | |||| Sbjct 134316 TACAAGGACTATTCTTTTTAGCCTG----TTCAAAAAGGTCCCTAACACGAGCTGGACCC 134261 Query 11711 ACACCAACAAACATCTCCACAAA 11733 |||||||||||||| || ||||| Sbjct 134260 ACACCAACAAACATTTCAACAAA 134238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031576078400