Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq27 116 3e-21 seq38 96.9 2e-15 seq30 93.3 3e-14 seq12 82.4 5e-11 >seq27 Length=1864556 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 |||||||||||||||||| |||||| | ||||| ||| |||||| | || |||||| | Sbjct 1617274 TAAAATGCAAATTTTTGTTAAAACTTTAACTGGTAAAACTATTACCTTAGAAGTCGAAGG 1617333 Query 27846 CACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| || || | ||| |||||| ||||| || ||||||||| |||| Sbjct 1617334 TTCCGACACCATTGAAAAT--GTCAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCC 1617391 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||| | ||||| |||||||| |||||||| || || | || | | || ||| Sbjct 1617392 GATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGAT 1617451 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| |||||||| || || ||||| || Sbjct 1617452 TACAACATTCAAAAAGAATCAACATTACATTTAGT 1617486 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || | ||||| ||| |||||| |||| || ||| | | Sbjct 1617962 ATGCAAATTTTTGTAAAGACCTTGACTGGTAAAACTATTACCCTTGAAGTTGAAGGTTCA 1618021 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| |||||||||||| |||| || | Sbjct 1618022 GATACCATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCCGACC 1618079 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | ||||| |||||||| |||||||| || || | || | | | || ||||||| Sbjct 1618080 AACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACCCTCTCTGATTACA 1618139 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||| |||||||| |||| | ||||| ||| Sbjct 1618140 ACATTCAAAAAGAATCCACTCTCCATTTAGTT 1618171 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || | ||||| ||| ||||| |||| || ||| | | Sbjct 1617506 ATGCAAATTTTTGTAAAGACCTTAACTGGTAAAACAATTACCCTTGAAGTTGAAGGTTCA 1617565 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| |||||||||||| |||| || | Sbjct 1617566 GACACCATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATC 1617623 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | | ||||| || || |||||||| || |||| | | || || ||||| | Sbjct 1617624 AACAAAGACTTATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACATTATCTGATTATA 1617683 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||| |||||||| |||| | || |||||| Sbjct 1617684 ACATTCAAAAAGAATCCACTCTTCACTTGGTT 1617715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||| | ||||| ||| ||||| | || || ||| | || Sbjct 1617734 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACCATTACCTTAGAAGTAGAAGGTTCC 1617793 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || || || ||||| |||||||||||| | || || || Sbjct 1617794 GACACCATTGAAAACGTAAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCCGACCAA 1617853 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | | ||||| ||||| |||||||| || || | || | | || ||||||||| Sbjct 1617854 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 1617913 Query 27970 ATCCAAAAAGA 27980 ||||||||||| Sbjct 1617914 ATCCAAAAAGA 1617924 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| | ||||| ||| |||||| | || || ||| || | Sbjct 1696166 AATGCAAATCTTTGTTAAAACCTTAACTGGTAAAACTATTACCTTAGAAGTTGAAGGCTC 1696107 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | || || || ||||| || ||||||||| | || || || Sbjct 1696106 AGACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAAGGTATCCCACCCGACCA 1696047 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| | | ||||| ||||| |||||||| || |||| || | | |||||||| || Sbjct 1696046 ACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTCTTTCCGATTATAA 1695987 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||||| || || ||||| || Sbjct 1695986 CATCCAAAAAGAATCAACATTACATTTAGT 1695957 >seq38 Length=878590 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || | ||||| || ||||| |||| || ||| | | Sbjct 148412 ATGCAAATTTTTGTTAAGACCTTGACTGGTAAGACCATTACCCTTGAAGTTGAAGGTTCT 148471 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| || ||||||||| | || || | Sbjct 148472 GATACCATCGAAAAT--GTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCCGACC 148529 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| |||||||| |||||||| || || | || | | || ||||||| Sbjct 148530 AACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACA 148589 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||| ||| | |||||||| Sbjct 148590 ACATCCAAAAAGAATCAACTCTCCATTTGGT 148620 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| | ||||| ||| ||||| | || || ||| | | Sbjct 148182 AATGCAAATCTTTGTTAAAACATTAACTGGTAAAACCATTACCCTAGAAGTTGAAGGTTC 148241 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| |||||| ||||| || ||||||||| | || || Sbjct 148242 CGACACCATCGAAAAT--GTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGAT 148299 Query 27907 CAGCAACGGTTAATTTTTGC-CGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||| | | ||||| || ||| |||||||| || || | || | | |||||||| Sbjct 148300 CAACAAAGACTCATTTTCGCTCGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGATTA 148359 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||||| || | |||||||| Sbjct 148360 CAACATCCAAAAAGAATCAACCCTCCATTTGGT 148392 >seq30 Length=714265 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| ||| || || | || |||||| | | Sbjct 370044 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAAACCATCACCTTAGAAGTCGAAGGTTCA 370103 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| ||||| ||||| |||||||||||| | || | Sbjct 370104 GA-----TACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACCCG 370158 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||| || ||||| ||||||||||| |||| || | | || |||| Sbjct 370159 ATCAACAACGTTTAATCTTCGCCGGTAAACAATTGGAAGACGGTCGTACTCTCTCTGATT 370218 Query 27965 ACAACATCCAAAAAGA 27980 |||| ||||||||||| Sbjct 370219 ACAATATCCAAAAAGA 370234 >seq12 Length=1224149 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 27785 GTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAA 27844 ||| |||||| ||||| || |||||| | ||||| || ||||| | || || ||| Sbjct 427186 GTAGAATGCAGATTTTCGTTAAAACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAAG 427245 Query 27845 GCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902 | | || | || | ||| ||||| ||||| |||||||||||| | || Sbjct 427246 GTTCAGATACCATCGAAAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCACC 427303 Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 || || ||| | | || |||||||| |||||||| || |||| || | | | || || Sbjct 427304 CGATCAACAAAGACTTATCTTTGCCGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGA 427363 Query 27963 TTACAACATCCAAAAAGA 27980 |||||| ||||||||||| Sbjct 427364 TTACAATATCCAAAAAGA 427381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862165798058