Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20lacteum_20[genbank_20GCA_5F001606155.1_202016-04-04] 54 sequences; 23,375,662 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq36 136 3e-27 seq27 93.3 4e-14 >seq36 Length=2033623 Score = 136 bits (150), Expect = 3e-27 Identities = 393/598 (66%), Gaps = 14/598 (2%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| ||||| ||||| | |||| ||| || || || | ||| | || || Sbjct 730417 ACACCAGTCTTTTGATATTCAGCTACTTTACCTTCAAAAAAGTTTGATTTTCTTTGCAAA 730358 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAG 4366 ||||| ||||||| |||| || ||||| || | || || | ||||| || || Sbjct 730357 GAAATCATTTCCATCCAATCGAAAGGATTGGTAGAATTAAAAATCTTTTTGTAACCA-AG 730299 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 || |||| | || || || ||| || || || || |||| | || ||| || Sbjct 730298 AGAGACAACTAGACGATCTGCGCAAAACTCAATGTATTGTGACATGGCTCTGCTGTTCAT 730239 Query 4427 TCCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 ||||| | ||| || ||||| | | || | ||| || | ||| | || || | Sbjct 730238 ACCAATGAGATCA-ACTGGTAGAGATTCAGTTACAAATTCCTTTTCACATGCAACAGCAT 730180 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATA 4545 || |||| || ||| | || | | || | | | ||||||| | | | | | | Sbjct 730179 CTTTGATAATGTCTATAATGATTTTTTCATCTAATCTATTTACGAGTTTACTGTAGAGCA 730120 Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 |||| ||||| | |||||| | |||||| || | ||||||| ||| || || || || | Sbjct 730119 AACAAGCAAAGTTACAATGTAGACCTTCATCACGACTAATCAATTCATTGGAGAATGTCA 730060 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAA 4663 | || |||||||||||||| || || |||||||| || | | | || | | | |||| Sbjct 730059 AACCTGGCATTAAACCTCTTTTCTTTAGCCAAAAGATGGAACAGAAACTACCACTGAAA- 730001 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 || || ||||| || || ||||| || || |||| | || || || | ||| Sbjct 730000 -AAGATACCTTCAACAGCTGCAAATGCCACCAATCTCTCTGCAAATGATCTAGAATTG-- 729944 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 |||||| | || ||||| | || || || || || || ||||| || | |||||| Sbjct 729943 ----ATCCATCTCAAGGCCCATTCTGCCTTCTTTTTCACACATGGAATAGTTTCTATAGC 729888 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || ||||||||| ||||| ||||| || |||||| || || |||| || ||| Sbjct 729887 ATTGAATAATTTAGCTTTTTGTTCTGGGTTTTTAATATATGTATCAATTAAAAGACTA 729830 Score = 132 bits (146), Expect = 4e-26 Identities = 230/332 (69%), Gaps = 7/332 (2%) Strand=Plus/Minus Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 |||||||||| |||||||| || ||||| || || || || || ||||| ||||||| || Sbjct 729763 TTTCAGAATGAATATTTTCAATGGCAATTTGGAAACCATAGAAACATCTGGCTTCTGGTA 729704 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||||||||| | |||| | | ||| ||||| || || ||||| || |||| Sbjct 729703 TTTGAACTTCACTCATAAATTTAGTTGCTAGATTTTCATTAACAATACCATCTGAAGCTG 729644 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGT--TTTTT 5020 ||||||| || || |||| || || || | | ||| ||| |||| | |||| Sbjct 729643 CAAAAAATGCTAATACATTGGAAATGAAATGTTTTTCATTTTCA--TTTAACTTATTTTC 729586 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||| | | ||| | | |||||||| ||||| | ||||| || || ||||| || Sbjct 729585 CCATTCATTGATATCACTGGCTAAATCAATCTCTTCTGCTGTCCAGAATGAGGCTTCTGC 729526 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTC 5140 || ||| |||||| ||| || || || || | ||| |||| || |||||||| | | Sbjct 729525 TTGTTTATACATATTCCATATGTCTGGGTATTTAATTGGAAATAGAACAAATCTATCCTT 729466 Query 5141 GTTAGGTGTAAGAAGCGGTTCTTGAACAATAT 5172 ||| | | | || ||||||| |||| ||| Sbjct 729465 GTTCTCTTTTAAAATTGGTTCTTCAACATTAT 729434 >seq27 Length=1864556 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31697 GGATCAGAGGGTTCTGCGGGATATGATTTATATAGCGCCTACGACTATGTGGTAGAGGCA 31756 |||||| | | | | || ||||||||||||| || || | || | | || ||| Sbjct 788827 GGATCAAAAGATGCAGCTGGATATGATTTATCAAGTGCACAAGAATCAATTGTTCCTGCA 788768 Query 31757 AAATCTAGAGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGA 31816 | | || ||| || ||| || |||||||||||| || | || ||| ||| ||| Sbjct 788767 AGAGGTAAAGCATTAATTATGACTGATATTCAAATTGCTATTCCAGAAGGTACCTATGGA 788708 Query 31817 CGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTT 31876 || ||||||| ||||||||||||||| || | | || || || ||||| ||||| Sbjct 788707 AGAGTAGCTCCAAGATCTGGATTGGCATGGAAGAATTCAATTGATGTCGGTGCAGGTGTC 788648 Query 31877 ATAGATTCAGACTATAGAGGAAACGTTGG 31905 || |||| ||||| ||||| || ||||| Sbjct 788647 ATTGATTTTGACTACAGAGGTAATGTTGG 788619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049318947982