Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq451 149 1e-30 seq98 84.2 5e-11 >seq451 Length=202505 Score = 149 bits (164), Expect = 1e-30 Identities = 381/579 (66%), Gaps = 6/579 (1%) Strand=Plus/Plus Query 150607 TTGCTTCGTAGAACTTCCTAATCAGAACCGGGAATACATGTCCATTTTGTAGGTCATAAC 150666 |||| || | |||| | | ||||| |||||| |||||| |||||| | | ||| Sbjct 166470 TTGCCTCATGGAACCTGCGGATCAGCGCCGGGAGTACATGCGAGTTTTGTGGATGGTAAT 166529 Query 150667 GGTCGTTTGGGCCACTGAGGTTCGTCGGCATTACTGACACGAAATTACAACCGAATTGTT 150726 ||| || || | || || ||||| || || | ||||||||||||| | || Sbjct 166530 TGTCATTATACCCGTATAAATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGG 166589 Query 150727 TTCTGTAGGCGTCGCACATTTCGATTCCGGCTATCTTCGCTATCGCGTATGGTTTGTTAG 150786 ||||||||||| ||||||| || ||||| || || || || || || |||| || | Sbjct 166590 CCCTGTAGGCGTCACACATTTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGG 166649 Query 150787 TAGGTTCGAGAAACCCGGTCATCAGGTATTCTTCTTTGATGGGGTTTGGGGATTCTTTCG 150846 | ||| || || || || | ||||||||||| || | ||| | ||||| | |||| Sbjct 166650 TTTCTTCCAGCAAGCCAGTAAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCG 166709 Query 150847 GGTATATACAGCTACTCCCGAGGAAAACGAGTTTTTTCACATTGAATGTTTT---AGAAG 150903 |||| ||||| || || ||||| | | ||||| | || |||| || Sbjct 166710 GGTAAATACAACTGGAACCCAGGAACATTAACTTTTTGA---TGCCGTTTTTCCATGACT 166766 Query 150904 CGTGGATAACGTTCGTTTGAATCATCAGGTTGTCACGAATAAAATCACCACCAAAAGAAT 150963 | ||||| || || | ||||| || || || || |||||| | | | | | Sbjct 166767 CATGGATCACATTGTTCTGAATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGT 166826 Query 150964 TGTTTGCATGAATACCCCCTACTTTGGCAGCGGCGAGAAATACGTATTCTGGTGTTTCCA 151023 |||| ||| ||| || || |||||||| || ||||||||||| || || ||| ||||| Sbjct 166827 TGTTGGCAATAATTCCGCCCACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCT 166886 Query 151024 TTTCGAAAAATGCGGTCACTTCTTGTTGATTGGTCAAATCGAGTTCTTTAGATGATCGGG 151083 |||| || || | | ||| | ||||||||| | || || | |||| |||| Sbjct 166887 TTTCAAAGAAATCACTTACTGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGG 166946 Query 151084 TGATGATATTTGTATAACCCTCTTTCTGTAGCAGTCTTACCAGCGAGCTTCCAACCATTC 151143 | | | ||| || |||| ||||| || || || | || || ||||||| Sbjct 166947 TCAAAAGATTATTAAAACCTTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTC 167006 Query 151144 CAGTATGACCAGCCACGTAGATTTTAGAGTGCTTATCCA 151182 || ||||| || || || ||||| ||||| || |||| Sbjct 167007 CACGGTGACCGGCAACATATATTTTTGAGTGTTTTTCCA 167045 >seq98 Length=772300 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 41244 GAGAAATTTTACTTTACACCAAGTAGCAATCCG-TATGAAGTTTTTGAAACAAAATTCGG 41302 ||||||||||| ||||| ||| | | | | ||| |||| ||| |||| || | | Sbjct 403152 GAGAAATTTTATTTTACCCCAGGC-GATTTAGGCTATAAAGTATTTAAAACCAAGTATGC 403094 Query 41303 GAAAATGGGTGTGCTGATTTGCTGGGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTG-- 41360 ||||| |||||||||||||||||||| ||||||| | |||||||| | | ||| Sbjct 403093 CAAAATTGGTGTGCTGATTTGCTGGGACCAGTGGTATCCCGAAGCAGC---ACGGCTGAC 403037 Query 41361 -GCTCTAGAAGGCGCTGATTTTATTGTATACCCCACCGCCATCGGCTCGG 41409 || || || || |||||| | || ||||| ||||| ||||||| || Sbjct 403036 CGCGCTGATGGGTGCAGATTTTCTGGTTTACCCGACCGCAATCGGCTGGG 402987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057634185053150