Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq98 192 6e-44 seq689 100 3e-16 >seq98 Length=772300 Score = 192 bits (212), Expect = 6e-44 Identities = 589/895 (66%), Gaps = 27/895 (3%) Strand=Plus/Plus Query 15884 TTATCTTGTTTAGAAG-CAACACCCA--TTCTTTGGTAATCACTAACGCGTTTTTCGAAG 15940 ||||||| |||| | |||||||| || |||| ||||||| || ||||| || ||| Sbjct 410072 TTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAG 410131 Query 15941 AAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAA 16000 || || ||||| || | | || || | |||||||||||||| ||||| || || | Sbjct 410132 AAATTGGTTTTGCCTTGCAGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGA 410191 Query 16001 AATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGA 16060 |||| || | || ||||||||| | |||| ||||| ||||| || ||||| || Sbjct 410192 TATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGT 410251 Query 16061 CACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGT 16120 |||| | | ||| || || || || ||||| | || | ||| | ||||| Sbjct 410252 GACATCAGTTTTGCATTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAATTCC 410311 Query 16121 TGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG--GTGTAT 16178 | ||| || | ||||| || || || || || || || | | | || ||| Sbjct 410312 TTTTCGATTTCTACCGCGTCGCGGATAAT-TCCATGAA-CGACTTCCTGGCTCAGTTTAT 410369 Query 16179 GGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGA 16238 || || |||| | | || || || || || ||||| | || || |||||| | Sbjct 410370 TTTTGAGCATTTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAA 410429 Query 16239 TAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCG 16298 | | || || ||| |||| ||||||||| |||| ||| || |||||||| |||| Sbjct 410430 TCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCG 410489 Query 16299 CAGCAAATGACCCCGAA-AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 | || | | |||| ||||| || || || || | || ||||| | || ||||| Sbjct 410490 AA-CAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCG 410548 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 || | | | | | | ||||| | | ||||||| ||||||| |||| | Sbjct 410549 GCAAAATTTCCGCCCTCA------ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACA 410602 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATAC 16477 ||| | ||| |||| ||| | |||| | |||||||| | | ||| | ||||| Sbjct 410603 CAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAG 410662 Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 ||||| ||||| | || |||| ||||| ||||| || || ||||| || ||| Sbjct 410663 GTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCA 410722 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCC--GCCAGGTTC 16594 || || || || || || | | |||||||| | | | || |||| || ||||| Sbjct 410723 TAAAAACAACGGGCTTCGGGAAGCTGTACTTCGCTCATGAA---GTTCACTGCAAGGTTT 410779 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| || || |||||||||||||||||||| || | ||| || |||||||| Sbjct 410780 TCATTTACAATGCCGTCACTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGC 410839 Query 16655 TCGTCAG-ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGG 16713 ||| | | || |||| | | ||| | || || | || | || | |||||| | Sbjct 410840 TCGCCTGTATTTAAG-TTGTCCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGC 410898 Query 16714 CGTCCAAAAGCTAGC--CACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 ||||| || || || |||| ||| |||||||||| ||| || ||| ||||| Sbjct 410899 GGTCCAGAAACTTGCTTCACT--CTTCTTATACATTTCCCAGATTTCAGGGTATT 410951 >seq689 Length=46727 Score = 100 bits (110), Expect = 3e-16 Identities = 207/301 (69%), Gaps = 13/301 (4%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||||| || | |||||||| | |||||| | ||||||||||| || Sbjct 18318 AGACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTC 18259 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCG--CAGCAAATGACCCCGAAA 16316 || |||||||| ||| || ||||| | ||| || || | ||| || | || || | Sbjct 18258 AAACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACT--ACCAGAGA 18201 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 | || |||||||| || | |||||| || | || || || || ||| | | | Sbjct 18200 AAAAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACG----ACTTGGAA 18145 Query 16377 TACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 | || |||||| || | |||| || || || | || | ||| || || |||||| Sbjct 18144 TTTGAGATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATG 18085 Query 16436 GCCTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAAC 16493 || || ||||| || | ||||| ||| || || | ||||| ||||| || | ||||| Sbjct 18084 GCATTGAACAAATTGGCCTTTTCAACTGGAT-TC-TTAATATATGTATCGATTAATAAAC 18027 Query 16494 T 16494 | Sbjct 18026 T 18026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511324870516600