Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq98 284 1e-71 seq531 150 2e-31 seq404 120 4e-22 >seq98 Length=772300 Score = 284 bits (314), Expect = 1e-71 Identities = 806/1223 (66%), Gaps = 24/1223 (2%) Strand=Plus/Plus Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||| || ||||||| ||||| || || | ||||||| | || ||| | || ||| Sbjct 408316 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 408375 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 ||||| || | || ||||| || ||||| ||||| || ||||| | ||| | ||| Sbjct 408376 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 408435 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 || || | | | || || ||| |||||| | |||||||||||| ||| |||||| Sbjct 408436 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 408495 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT 53680 ||||| ||||| | | | | ||||| | | ||| || |||||| | | Sbjct 408496 TTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACTCT 408555 Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-- 53738 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 408556 CCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTCT 408615 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | | ||| | ||| || || || ||||| || || |||||||||||||||| Sbjct 408616 TTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAAT 408673 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 |||| || || || |||| ||||| ||||| | | | || || || |||| Sbjct 408674 TTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTT 408733 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT----G 53914 ||||||| || || | ||| || ||| | | | || |||| || | ||| | Sbjct 408734 CAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACGGG 408790 Query 53915 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTG 53974 | || || || ||||||| | ||| || || || || | || || || | Sbjct 408791 CACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAATC 408848 Query 53975 T-CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 | ||| ||| || ||||| ||||| | || ||| ||||||| || | || | Sbjct 408849 TGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCT 408908 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCT 54092 | |||| || || ||| | |||||| || ||| |||| |||||||| | | |||| | Sbjct 408909 TCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCTT 408967 Query 54093 CGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 | || || || |||||| || || || || || | ||| | |||||| || | Sbjct 408968 CTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCT 409024 Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209 ||| ||| |||| | | | || ||||| ||| ||||| || | || | |||| Sbjct 409025 CCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGG 409084 Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269 | | ||| | ||| ||||||| || | ||| |||||| | || || || || | Sbjct 409085 TATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAA 409144 Query 54270 TATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 |||| ||| ||||||| || ||| || || ||| || || ||||| ||| | Sbjct 409145 TATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTG 409204 Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 | ||| ||| | ||||||| ||||| || || || || ||||| || ||| |||| Sbjct 409205 AAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGG 409264 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 | |||| ||| ||| ||||||||| | | || | ||||||||||| || || | Sbjct 409265 TCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGG 409324 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 || ||||||||||| ||| | || || ||||| | || || || |||| Sbjct 409325 TTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATAT 409384 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 | || ||||| ||||| || |||||||| |||| || || || | ||| || || | Sbjct 409385 CTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT-T 409443 Query 54570 TGTTGTT-TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 54628 ||| || ||||||||||| ||||||||||| | |||||||| |||||||| | | || Sbjct 409444 TGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAAT 409503 Query 54629 GAAAAGTCTCGTTCGTAAATAAT 54651 ||| || | || |||||||| Sbjct 409504 CCAAAATCCCTGTCATAAATAAT 409526 Score = 224 bits (248), Expect = 1e-53 Identities = 580/877 (66%), Gaps = 9/877 (1%) Strand=Plus/Plus Query 23842 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901 ||||||| || |||||||||||||| || || ||||| ||||| |||| | || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961 | ||||| ||||| | |||||||| ||| ||| ||| | || | |||| ||| | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | |||| ||||| |||||||| ||||| | ||||| || |||||| || || | Sbjct 410220 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 410279 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 410280 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 410339 Query 24082 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 24141 | || ||| | ||| || || | |||| | | || || || | Sbjct 410340 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 410399 Query 24142 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 | || || || | ||||| ||||| ||| || || || ||| || || || |||| Sbjct 410400 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 410459 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATTCCT 24260 | ||||| | ||||| | ||| || || || || | | ||| | |||||||| ||| Sbjct 410460 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 410518 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || ||||| || || || | | | ||| || || ||| ||| ||||| Sbjct 410519 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 410575 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || || || ||||||||||| | ||||||| |||| || || | Sbjct 410576 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 410635 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | |||||| | | |||||||| ||| ||||| |||| || ||| |||| || || Sbjct 410636 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 410695 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 |||||||| || || || || || || ||||| | || |||| || ||||||||| Sbjct 410696 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTCG 410755 Query 24501 ATACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 | || | ||| |||| | |||||||| || || |||||||| || |||||||| | Sbjct 410756 CT-CATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 410813 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618 | | || ||| || |||| ||| ||| ||| || | ||| | || | Sbjct 410814 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 410873 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 410874 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 410933 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||||| ||| | |||| ||| || |||| |||||| Sbjct 410934 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 150 bits (166), Expect = 2e-31 Identities = 208/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || || || |||| ||| || || | ||| || | ||||| || | || Sbjct 87868 ACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGCCAG 87927 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| | |||||| || || ||||| ||||| || || |||||| || || Sbjct 87928 ACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAAAAA 87987 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || ||||| ||||| ||||| || | ||||| ||| || | || || | ||| Sbjct 87988 GATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCAGAGTTGTTTAT 88047 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| |||||||||| ||||||||||| ||||| || ||||||||||||||||| || Sbjct 88048 CCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCATTGAA 88107 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 | | | | |||||| ||||||||| ||||||||| ||||| ||||| Sbjct 88108 TAACTTGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATAGACT 88158 Score = 111 bits (122), Expect = 2e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||| | || |||||||||||||||||||| |||||||| | |||||| ||| |||| Sbjct 88220 CTATAAGTCTCTGAATGAATGTTTTCAATGGCAATTTGAAAGCTGTAGAAGGATCGAGCC 88279 Query 24483 TCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | || || ||||| | || || || ||||| ||||||||| || || || || Sbjct 88280 TCTGGTATTTGGACTTC-AGCCATGAAGCGAGTTGCTAGATTTTCATTTACAATGCCATC 88338 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 24586 | ||| ||||| || || | |||||||||||||| | | |||| Sbjct 88339 AGAGGCAGCAAAGAATGCAAGCACATGTTTTATAAAGTGTCTTTC 88383 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 24601 TATTCCAAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 |||||| || ||| |||||||| |||| ||| | || | | ||||| ||||||||| Sbjct 88479 TATTCCCATTCATAGATATCTTGTGATAGATCGATATCATTAGCAGTCCAGAATGATGCC 88538 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 ||||| ||||||||| ||||| ||||| | |||| |||||||| | ||||||||| Sbjct 88539 TCTGCAGATTTATACATCTTCCAAATGTCTGGGTATTTGATTGGAAACAGAACAAATCTG 88598 Query 24720 TT 24721 || Sbjct 88599 TT 88600 >seq404 Length=78127 Score = 120 bits (132), Expect = 4e-22 Identities = 598/944 (63%), Gaps = 15/944 (2%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 ||||| || || || || || ||||| || || | | | | ||||| | ||||| Sbjct 48965 GCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTGTATTGGACAATCTCT 49024 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| || || |||| |||||| || | ||| ||||| || ||| || || Sbjct 49025 GTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTTGACTTGGCATTGCAG 49084 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 || ||||| || || || |||| || ||||| |||||||| || || ||||| | | Sbjct 49085 GCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGACTCGATAATGGAGAAC 49144 Query 53885 CAGACGACACGAGCCTTTATTATA----GATTTGTATCTCTTTTCTCTTTCGTATAGTGT 53940 |||| | | ||||| || | || | || | | | |||| | || Sbjct 49145 CAGAGATCTTGGGCCTTGATGGTCTTGCGACCGAGACCTGGGGTGGCCT-CGTAGCGGGT 49203 Query 53941 ATACA-ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999 || | | || || |||||||||||| || | | || || || | |||| Sbjct 49204 GTAGAGAGCGCGGAA-CTCGTCTCCCCAGCAATCAGCGAGACCTGGGGCCTCGTTGGGAC 49262 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 | | | | |||||| ||| ||| || || | |||||||||||| | | ||| | Sbjct 49263 AAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCATAAAGAGATCGGATACCCAGA 49322 Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 | || ||| || || | || | || || ||||| ||||| ||| || | Sbjct 49323 GGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCCGTGGTTCTTGCGAAGGTCAA 49382 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179 ||||| |||| | ||| | ||||| || || | ||| |||| | |||| || | Sbjct 49383 GGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGATGGCAAAGGCTCCCTTGCGCT 49442 Query 54180 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239 || ||||| || || | ||| | ||| |||| || | || | | ||| |||| | Sbjct 49443 TGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGAACACGCGAAGCATGGGAACGA 49502 Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA---CGAATATTAC 54296 ||| ||||||| ||| ||||| ||| |||||| | || |||| || || || Sbjct 49503 GACCGTTGGATGTACCGTTGGTGCCGCGGATATA---TGAACGGGCAGCGCGGATCTTGT 49559 Query 54297 TAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 | | ||||| || || || ||| || ||||| | |||||| | || | |||| Sbjct 49560 GGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAGGGCGCATTGCTTGAGGGTAT 49619 Query 54357 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 54416 | ||||| || || || |||||| |||| | | || || || ||||||| || Sbjct 49620 CGTAGATACCATCGATCGAGTCATCCTTCATCTGGACAAGGAAGCACGACGACATTT-GT 49678 Query 54417 GACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 | ||| | || |||| ||||| | ||| || | ||||| ||||| | | ||| Sbjct 49679 GGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTGGGTAAAGTAGCGCTGGGAA 49738 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 54535 || | | || |||||||| || | ||| || || || || || | | |||| Sbjct 49739 AGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCGCCGTGGATACCAAGAGAGACA 49798 Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595 ||||| | ||||||||| || | |||| ||| || || || |||||||||| Sbjct 49799 CGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCGTCGATGCGGTGCAAGTAGGAA 49858 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 ||||| || || || |||||| ||| ||| |||||| || Sbjct 49859 CGCTCCAAGGTCTTGAAGCCAAAAAAGTCGTACTCAAAGTCACG 49902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593617661612400