Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq6140 158 1e-33 seq7603 127 2e-24 >seq6140 Length=1248 Score = 158 bits (174), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCT 145747 |||| | |||||| |||| ||||| || ||||| ||| | ||| || || |||| Sbjct 371 GCTCGAAATGGTTGGCATAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCT 430 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG 145807 || ||||||| || || |||||| ||||||||||| ||| || || ||||| | Sbjct 431 GCAGACCCGTGACCTGCGCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACG 490 Query 145808 GCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG 145867 |||| || || || || | ||||||||||| ||||||||||| |||| ||| | | Sbjct 491 GCACGCCGAGAAAGATATCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGG 550 Query 145868 CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 |||||||||||||| ||||| ||||||||||||||| ||||| | | | ||||| Sbjct 551 CCACGTAGAACTGGAACAGGCAGTGGCAGGGCGGCAGCGCCATTTCATCGACGAGCGCCG 610 Query 145928 GGTTCCAGGCGG 145939 | ||||| |||| Sbjct 611 GATTCCATGCGG 622 >seq7603 Length=749 Score = 127 bits (140), Expect = 2e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCC-CAGGACGTGGATGAAGTCCCCGGGCTC 145748 || ||||| ||| ||||| ||| ||| || | || | | | ||| || ||| || Sbjct 694 TCGACGTGATTGTCGTAGATGTGGCAGTCGCCGCCGGTCCAG-ACGAACTCGCCGACGTC 636 Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| || | | ||||| | ||||| ||| ||||| | ||||||||| |||||||| || Sbjct 635 GAGTCCGGCCTGCTGGGCCATCATGTGGGTGAGCAGCGCGTAGCTGGCGATGTTGAACGG 576 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC 145868 || || || |||||| | |||||||||||||||||||||||||| ||| | || Sbjct 575 AACGCCGAGGAACATGTCGGCGCTGCGCTGGTACAGCTGGCAGGAGAGCTTGCCGTCGGC 516 Query 145869 CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||| | | |||||| |||| ||||||||| Sbjct 515 GACGTAGAACTGGAAGAAAGCGTGGCACGGCGCCAGGGCCAT 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973499680200