Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq593 143 4e-29 seq420 105 1e-17 seq48 100 4e-16 >seq593 Length=58250 Score = 143 bits (158), Expect = 4e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| ||||||| || || ||||| ||||| ||| | || | || | | | Sbjct 29377 ATGCAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCT 29436 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| |||| || || |||||||| || ||||| || ||||| ||||| Sbjct 29437 GACACCATCGACAATGTTAAGAC-CAAGATTCAAGACAAGGAAGGAATTCCACCCGATCA 29495 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || ||||| || ||||| ||| | |||||| | || || | || || || Sbjct 29496 ACAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTACAA 29555 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | ||||||||| | ||| |||| || ||||| Sbjct 29556 CATTCAAAAGGAATCTACTCTCCATTTGGTTCTTCGTCTACGTGGAGGTAT 29606 >seq420 Length=40905 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| || || ||||| ||||| || | ||| |||| | | Sbjct 13774 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCTTGGAGGTTGAGGGATC 13715 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || || | || || ||||||||||| || ||||| ||||| ||||| Sbjct 13714 TGATACCATCGACAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATTCCACCCGATCA 13655 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | ||||| ||||| || || ||| | |||||| | || || | || || || Sbjct 13654 ACAACGCCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAA 13595 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || ||| | || ||||| | ||| | || || || || Sbjct 13594 CATACAAAAAGAGTCTACTCTTCACTTGGTACTCCGTCTCCGTGGAGGAAT 13544 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | |||||| | || ||||| || || || | ||| | || | Sbjct 14230 AATGCAAATCTTTGTCAAGACATTGACTGGCAAGACCATCACACTTGAGGTCGAGGGCTC 14171 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | || || || ||||| || ||||| || ||||| ||||| Sbjct 14170 AGACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 14111 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || || ||||| ||||| ||| ||||||| | || || | || || || Sbjct 14110 ACAAAGACTCATCTTTGCTGGAAAGCAACTAGAGGACGGACGTACCCTTTCCGACTACAA 14051 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| | || ||||| | ||| | || || || || Sbjct 14050 CATTCAAAAGGAGTCCACTCTTCACTTGGTACTCCGTCTCCGTGGAGGAAT 14000 >seq48 Length=44992 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| ||||| || | || | || | Sbjct 22404 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATCACCTTGGAAGTCGAGGGCTCA 22463 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || || || ||||| || ||||| || ||||| |||||| Sbjct 22464 GACACCATCGATAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 22523 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| || || || | |||||| |||| ||||| || || || Sbjct 22524 CAAAGACTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGACTACAAC 22583 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| | ||||||||| | ||| | || || || || Sbjct 22584 ATTCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGTGGAGGAAT 22633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755323747984000