Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq816 2634 0.0 seq24 199 1e-46 seq215 161 3e-35 seq400 84.2 6e-12 >seq816 Length=14434 Score = 2634 bits (2920), Expect = 0.0 Identities = 1541/1594 (97%), Gaps = 2/1594 (0%) Strand=Plus/Minus Query 21041 GACAAAAAATTAGCGCAAGAAGACAAAAA--TCACCTTGCGCTAATGCTCTGTCTCAGGT 21098 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 13010 GACAAAAAATTAGCGCAAGAAGACAAAAAAATCACCTTGCGCTAATGCTCTGTTACAGGT 12951 Query 21099 CACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATC 21158 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 12950 CACTAATACCATCTAAGTGGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAGCATT 12891 Query 21159 ATGTAGTCTATTTTTTATACTAAAGATATTGTAACACATTGATATTAATGATTTTTAATG 21218 ||| ||||||||||||| ||| || ||| ||| | ||||||||||| |||||| | Sbjct 12890 ATGCAGTCTATTTTTTAGACTGAATCAATTATAAGCCGTTGATATTAATTGTTTTTACCG 12831 Query 21219 TTTCACGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 21278 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12830 TTTCACATTCAACTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCAATTT 12771 Query 21279 GTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTC 21338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12770 GTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTTTGTC 12711 Query 21339 CCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAG 21398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12710 CCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCCCGAG 12651 Query 21399 AAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCG 21458 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 12650 AAGATGTTGAGCAAATTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAACTGCG 12591 Query 21459 CAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTGCGCG 21518 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 12590 CAACTCGTGAAAGGTTGGCGGATCCCCTTCGAAGGAGAGACCTGATGCTTTTCGTGCGCG 12531 Query 21519 CATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAATTAT 21578 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 12530 CATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCACGACGAGTAGATGCAATTAT 12471 Query 21579 GGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTCCGAG 21638 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 12470 GGTTTCTCCGCCAAGAATCTTTTTGCATTTATCAAGTGTTTCCTTCATTGATATCCCGAG 12411 Query 21639 AGCATCAACATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGAC 21698 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 12410 AGCATCAACATGCAATGTTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCTCGAC 12351 Query 21699 ATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGTTG 21758 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 12350 ATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTCGCTG 12291 Query 21759 CCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTGCTGC 21818 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 12290 CCCGGTAACAACAGCCAGTTCCATTGCAAGTCTAAGCCAACATGGTGATGATTCTGCTGC 12231 Query 21819 TTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGC 21878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12230 TTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATTTTGC 12171 Query 21879 TGCGCGAGTGGCAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTCGGAA 21938 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 12170 AGCGCGAGTGGCTGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATAGCCTCTCGGAA 12111 Query 21939 TGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCAGCCTTGCCCTCGTCTATGTA 21998 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 12110 TGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGATGCCGCCTTGCCCTCGTCTATGTA 12051 Query 21999 TCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAG 22058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12050 TCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAGGCAG 11991 Query 22059 CCCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCC 22118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11990 ACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGATTCC 11931 Query 22119 TCTGCTGGCGAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACAGAATTATC 22178 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 11930 TCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAATTATC 11871 Query 22179 ACTGTTGATTCTTGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGC 22238 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11870 ACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGTTGGC 11811 Query 22239 CTGTATAGCTTCAGTGATTGCTATCCTCCTGTCTCGGCCTAATCCGAACTCTTTACCCGT 22298 ||||||||||||||||||||| || | |||||||||||||||||| |||||||||||||| Sbjct 11810 CTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCGGCCTAATCCAAACTCTTTACCCGT 11751 Query 22299 CCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATC 22358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11750 CCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTAAATC 11691 Query 22359 CCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTA 22418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11690 CCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCTGTTA 11631 Query 22419 CTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCT 22478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11630 CTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCATCCT 11571 Query 22479 TAACCGGAGGAGGGAATATCCTGCATTCGCGCACCCATCGACGAACTGTTTCAAGGCTTC 22538 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 11570 TAACCGGAGGAGGGAATATCCTGCACTCGCGTACCCATCGACGAACTGTTTCAAGGCTTC 11511 Query 22539 TTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGC 22598 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 11510 TTGGGCGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCTCCGC 11451 Query 22599 AATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22632 |||||||||||||||||| |||| | | ||||| Sbjct 11450 AATTACACGCAAGAAAAAACCGCCATCAGGCGGC 11417 >seq24 Length=857 Score = 199 bits (220), Expect = 1e-46 Identities = 207/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 37025 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTTTGCCTGTCA 37084 |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 37085 TGGGCTGTTAATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGACAAA--- 37141 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 37142 GCCGCA----TCCATC--------------ATCGCTGACATGCAGAAGCGTCAACGTGAT 37183 ||| | | | | || |||||||||||| ||| || |||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 37184 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37242 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 37243 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37273 ||| |||| || |||| | ||||||||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq215 Length=48791 Score = 161 bits (178), Expect = 3e-35 Identities = 349/508 (69%), Gaps = 18/508 (4%) Strand=Plus/Plus Query 12686 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12745 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12746 AAATAACGAACTCTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGAT- 12801 | ||||||||||| || || || ||||| | | ||| |||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12802 ATGCGTCAGAAAACCATAGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAG 12861 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12862 TGTTGCGGCGTGGTGGCG-CAGAAAAGCCG-CGTTGAACGTTATTTCCCGTGCCGGAATC 12919 || ||||| || || | | | | || | || ||| || |||||||||||||| Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAGGGCGGGCGCAGAAG--TACTTCCCGTGCCGGAACA 27717 Query 12920 TTGCCGCGGCGCCGGAGGACAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGG 12979 | ||| ||| |||| | || | ||| ||| || || |||||||| || || |||| Sbjct 27718 TCGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGG 27777 Query 12980 A-CTGGG-GAACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG-- 13035 | ||||| ||| ||||||| || |||||| ||||| |||||||| | | |||| Sbjct 27778 ACCTGGGCGAA--GTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTC 27835 Query 13036 AGCGAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGG 13095 | || || || || ||||| || || || |||||||| ||| || ||| Sbjct 27836 ACCGCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGG 27893 Query 13096 CCGGAGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCGCTGCTGGAGCGTCC 13154 || ||||||||||| || || ||| ||| || | || || ||| ||||| |||| || Sbjct 27894 CCCGAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCC 27952 Query 13155 GTTTGTGCTTGGACACTTCGACTGCTGG 13182 |||||| | ||| || ||||||||| Sbjct 27953 GTTTGTACATGGCGCCTGGGACTGCTGG 27980 Score = 96.9 bits (106), Expect = 9e-16 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 16436 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 16495 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 16496 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 16555 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 16556 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 16615 |||||| ||||||||| || || | ||| |||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 16616 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16675 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 16676 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTGCC 16726 ||||||| | | || ||| ||||| || || || ||||||||||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCC 32608 >seq400 Length=38681 Score = 84.2 bits (92), Expect = 6e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 22906 ACATCTCTACCCCCTGCGCCCGTACTTCAGCCAGGAAAGCATCGGTGGCTGGGGTTTCGA 22965 ||||||| || ||||||||||| ||||||||||||||||| || || || |||||||||| Sbjct 4129 ACATCTCCACACCCTGCGCCCGCACTTCAGCCAGGAAAGCGTCTGTCGCCGGGGTTTCGA 4070 Query 22966 TATC 22969 |||| Sbjct 4069 TATC 4066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126999675250140