Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq593 145 7e-30 seq48 138 1e-27 seq420 125 6e-24 seq456 113 4e-20 seq79 100 2e-16 seq404 93.3 4e-14 seq355 89.7 4e-13 >seq593 Length=58250 Score = 145 bits (160), Expect = 7e-30 Identities = 161/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || ||||| |||||||||||||| ||| | ||| || ||||||| Sbjct 29813 ACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCG 29754 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 || || ||||| || |||||||||| || |||||||| || || |||||||||| ||| Sbjct 29753 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGG 29694 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | |||| |||||| | || ||||||||| | ||| | || | Sbjct 29693 A--TCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCT 29636 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || ||||| |||||||| || ||||| Sbjct 29635 TGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| |||| | | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 29605 TACCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGG 29546 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||||||| || ||||| ||| | ||||| | || |||||||| | Sbjct 29545 AGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTG 29486 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| ||| || ||||| | |||| |||||| | | ||||| Sbjct 29485 GAATTCCTTCCTTGTCTTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGA 29426 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || ||||| || || || |||||||| || ||||| Sbjct 29425 CTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| |||||||||||||| || | ||||| ||||||| Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| || |||||||||| || |||||||| || || || ||||||||| Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||| ||||| | ||| | || || Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTA 28950 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| |||||||| || ||||| Sbjct 28949 CCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || |||||||||||||| || | ||||| ||||||| Sbjct 29357 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29298 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| || |||||||||| || |||||||| || || || ||||||||| | Sbjct 29297 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 29238 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||| || || | ||| | || || Sbjct 29237 ATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTTT 29178 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || |||||||| || ||||| Sbjct 29177 CCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 >seq48 Length=44992 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| ||||||||||| || ||| | |||||| |||||| Sbjct 22384 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCG 22325 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| || |||||||||| ||||||||||| || ||||||||||||||| | Sbjct 22324 AGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGA 22265 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | ||||||||| | || | || || Sbjct 22264 ATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCTTT 22205 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| |||||||| Sbjct 22204 CCAGTCAATGTCTTGACAAAGATCTGCAT 22176 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| |||||||||||||| || | ||||| ||||||| Sbjct 22840 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 22781 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | |||||||| || |||||||| || || || ||||||||| | Sbjct 22780 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 22721 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | ||| ||||| | || | || ||| Sbjct 22720 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTTG 22661 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| ||||| ||||||||||| Sbjct 22660 CCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| |||||||||||||| ||| || ||||| ||||||| Sbjct 22612 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCG 22553 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | || |||||||| || || || ||||||||| Sbjct 22552 AGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22493 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | || |||||| || | ||| | || ||| Sbjct 22492 ATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTCTTG 22433 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || || |||||||||||| Sbjct 22432 CCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 >seq420 Length=40905 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| |||||||||||||| ||| | |||||| ||||||| Sbjct 13793 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCG 13852 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || || |||||||||| || |||||||| || || || ||||||||| Sbjct 13853 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 13912 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | |||||||| | || | || || Sbjct 13913 ATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTTT 13972 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || ||||||||||| Sbjct 13973 CCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||||||||| |||||||| || | ||||| ||||||| Sbjct 13565 ACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 13624 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || || |||| || || || |||||||| || || |||||||| ||| | Sbjct 13625 AGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGA 13684 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | ||| ||||| | ||| | || ||| Sbjct 13685 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTG 13744 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||||||||| Sbjct 13745 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||||||||| |||||||| || | ||||| |||||| Sbjct 13337 ACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCA 13396 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| || || ||||| ||||| || || || ||||||||| Sbjct 13397 AGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGG 13456 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||| ||||| | ||| | || || Sbjct 13457 ATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTTT 13516 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || ||||||||||| Sbjct 13517 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| |||||||||||||| ||| | || || ||||| Sbjct 14021 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCCTCT 14080 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| ||||||| | || |||||||| || || || ||||||||| Sbjct 14081 AGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 14140 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | || ||||||||| | || | || ||| Sbjct 14141 ATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGTGATGGTCTTG 14200 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| || ||||| Sbjct 14201 CCAGTCAATGTCTTGACAAAGATTTGCAT 14229 >seq456 Length=67341 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| ||||| ||||||||||| | || || ||||| Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 21433 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| || |||| | ||| ||||||||||| || || |||||||||||| Sbjct 21434 AATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 21493 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | | ||| ||||||| ||| | || || Sbjct 21494 ATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTT 21553 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || | ||| || ||||| ||||||||| Sbjct 21554 CCTGTTAAAGTCTTAACAAAGATCTGCATG 21583 >seq79 Length=127859 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| ||||| ||||||||||| | ||||| |||||| Sbjct 118830 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCC 118771 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || || ||| |||| | ||| ||||||||||| || || |||||||||||| Sbjct 118770 AATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 118711 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || || || || | |||| ||| || | | ||| ||||||| ||| Sbjct 118710 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATCCCTCTACCTCGAGGGT 118661 >seq404 Length=78127 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 134412 AGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTGATGCTTTGCA-GGAAACACGAACA 134470 || || | ||| || ||||||| ||| ||||| || || || |||| ||||| | Sbjct 49613 AGGGTATCGTAGATACCATCGATCGAGTCATCCTTCAT-CTGGACAAGGAAGCACGACGA 49671 Query 134471 CATTTGTTGACGA-CGCGTACCCGCCGAAAACAGAGTCGGGCTCGCGTGCGTAAAGGTGC 134529 ||||||| | ||| | || |||| ||| || || ||| | ||||| |||||| || Sbjct 49672 CATTTGTGG-CGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTGGGTAAAGTAGC 49730 Query 134530 CCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACGTCGTCGCCGTGAATGGCCA 134589 | | | | || ||| || || ||| | | || |||| ||||||| || | | Sbjct 49731 GCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCGCCGTGGATACCAA 49790 Query 134590 GAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCATGATCACGTCGTCGAT 134641 ||| ||| |||||||||||||| ||||| | ||| ||||| ||||||||||| Sbjct 49791 GAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCGTCGAT 49842 >seq355 Length=81473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118557 ATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGC 118616 |||||||| ||| | ||| || ||||||||| || ||||| || |||| ||||| Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 118617 TGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTG 118676 ||||||||||| || || || ||||||||| || || || || | |||| ||| Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATAGTG 81354 Query 118677 TCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 || | | |||||||| | || | || ||||| || | || |||||||| || ||| Sbjct 81353 TCAGATCCTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTTGC 81294 Query 118737 AT 118738 || Sbjct 81293 AT 81292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433756351251460