Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq593 96.9 4e-15 seq420 95.1 1e-14 seq48 87.8 2e-12 seq2393 84.2 3e-11 >seq593 Length=58250 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 42940 ATTTATTGT----CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCC 42995 ||||||||| ||||||| || || | | ||| | |||||||| | || |||| Sbjct 29852 ATTTATTGTTACACCTATTGACCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCC 29793 Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 |||||||| ||||| || | ||||| || | || || || ||||| || || || ||| Sbjct 29792 TTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATG 29733 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 43115 || || || || |||| || | | |||||||||| ||| || |||| | | Sbjct 29732 AGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCG 29673 Query 43116 ACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | ||||| || | || || || | || || || ||||| || || ||||||||| Sbjct 29672 ATGGTGTCAGAGCCC---TCGACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACA 29616 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 29615 AAGATTTGCAT 29605 >seq420 Length=40905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||||| || | ||| |||||||||||| ||||| || | Sbjct 14002 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 14061 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| ||||| ||||| ||||| || ||||||| || || |||| || Sbjct 14062 AAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGG 14121 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 43131 | | |||||||| ||| || |||| ||| | | | ||||| || | | Sbjct 14122 GATTCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATGGTGTCTGAGCCC---T 14177 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || | |||||||| ||||| || | ||||| ||||||||||||||| Sbjct 14178 CGACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 14230 >seq48 Length=44992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 42941 TTTATTGTCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTG 43000 |||||| | ||||| ||||| | | ||| | ||||| || | || ||||||||| Sbjct 22872 TTTATTAT--TATTGACCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTG 22815 Query 43001 AATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCG 43060 ||| ||||| |||| || || || | || || |||||||| |||||||| ||||| || Sbjct 22814 AATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACG 22755 Query 43061 CTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACC 43118 || || |||| || | | ||||||| | ||| | || || |||| ||| | | | Sbjct 22754 TTGTTGATCGGGTGGGATTCCTTCCTTGT-CTTGAATCTTGGTCTTGA-CGTTGTCGATG 22697 Query 43119 GTGTC-GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 43177 || || | || || || || | || || || ||||| || || |||||||| || || Sbjct 22696 GTATCAGATC-CCTCAACCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAAT 22638 Query 43178 TTGCATT 43184 |||||| Sbjct 22637 CTGCATT 22631 >seq2393 Length=1004 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||||||||| | | || | |||||||| | |||| ||||||||||| ||||| Sbjct 866 TATTGTCCTCCACGAAGGCGGAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAG 925 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | ||||| || |||| || || ||||| || ||||| ||||||| || |||||| Sbjct 926 TCGGAAAGAGTGCGACCGTCTTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCG 985 Query 43071 GCCGGCACGCTCTCCTTGT 43089 | || | | ||||||| Sbjct 986 GGTGGGATTCCTTCCTTGT 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571717496181400