Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq24 132 1e-26 seq816 111 4e-20 seq1130 87.8 5e-13 seq2164 86.0 2e-12 >seq24 Length=857 Score = 132 bits (146), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 23/237 (10%) Strand=Plus/Plus Query 39022 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 39081 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 505 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 564 Query 39082 CCTACAAAGAGCAGCGCGATAAA---GCCACA----TCAATC--------------ATCG 39120 ||||||||| |||||||| ||| |||| | | || | || Sbjct 565 CCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA 624 Query 39121 CTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATACACAAAGGAGC 39180 |||| ||||||| ||| || || ||||| || | ||| |||| | |||||| |||||| Sbjct 625 CTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGT 684 Query 39181 TTGCTGATGCTAACGC-GACTATCGAAACTCTCCGCGCTGATGTTTCTGCTGGGCGT 39236 | ||| |||| || || || || || |||| || | || |||| | ||||| ||| Sbjct 685 TAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq816 Length=14434 Score = 111 bits (122), Expect = 4e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 32538 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 32597 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 4111 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 4052 Query 32598 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 32657 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 4051 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 3992 Query 32658 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 32717 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 3991 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 3932 Query 32718 CACTGGCATGGCGCCAACCAAATGTTCTACCGCCAAAAACG 32758 || || || ||| | ||| |||||| | || |||| || Sbjct 3931 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 3891 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 23392 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 23451 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11441 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 11382 Query 23452 TTAC 23455 |||| Sbjct 11381 TTAC 11378 >seq1130 Length=54118 Score = 87.8 bits (96), Expect = 5e-13 Identities = 87/110 (79%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 1517 TTTGAAGAGTTCCGCCTCTATCATCGCGACGAGAACGGCAAGATCGTCAAGACCAACGAT 1576 ||||||||||||||| | ||||| ||| | || ||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 1577 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 1624 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 21293 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 21344 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133373015127660