Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq60 140 1e-28 seq685 102 3e-17 seq29 87.8 6e-13 seq1130 86.0 2e-12 seq1863 84.2 8e-12 seq28 84.2 8e-12 seq74 82.4 3e-11 >seq60 Length=244765 Score = 140 bits (154), Expect = 1e-28 Identities = 324/478 (68%), Gaps = 34/478 (7%) Strand=Plus/Plus Query 35947 CCGTCGTCGTCC------TCGCCGCGAGTGGTGATGTTCAGCAGTGCGGAAAGCACGTAA 36000 ||||||||||| |||||| || |||||||||||||| || | | |||||| Sbjct 238526 CCGTCGTCGTCGCGGATATCGCCG---GTCGTGATGTTCAGCAGCGCACACATCACGTAG 238582 Query 36001 CGCTTGCCGTAGCTGACCGATGATCCAAGAGACTGAACGGCGTTCTTGCTGCCACT--CG 36058 |||||||| ||| | |||||| |||| || ||| ||| || |||| || | || Sbjct 238583 CGCTTGCCATAGGTAGTCGATGAGCCAACAGCCTGTACGTCG---TTGCGACCTTTTCCG 238639 Query 36059 -TGTCTAGCGGAACGAGCATCGTCGTCTGCTCTCGGTGTCCGGCGCAGTGCATCAGAATT 36117 | || | ||| | | ||| || || ||||| ||||| || | | |||||||| ||| Sbjct 238640 ATATCAATCGGCAGGCTCATGGTGGTTTGCTCGCGGTGGCCACCCCGGTGCATCAAGATT 238699 Query 36118 CCAGTAAC-CGAAACGCCAGTCTGAACAGTCTCGACGCGGAAGCTCACTGCGAAACCGAA 36176 ||||| || | | |||| | | | | | || || |||| | | || || ||| Sbjct 238700 CCAGTGACACTGATCGCC-TTTTCAGCGTTTTCCACCTTGAAGGTGATGGCAAACCCGTG 238758 Query 36177 CCGCTGCATGATCGGCTTCACGATGTCGTTGATGTCTTCGAAGGTCGCGTAGTTGCTGCG 36236 | |||||||||||||||||| | ||| |||||| |||| || |||||| | | | Sbjct 238759 CTGCTGCATGATCGGCTTCAAGGTGTGTGTGATGTGGTCGAGCGTGGCGTAGGAGTTTCC 238818 Query 36237 CTTTTGGCCGTTGACGGTGATAGCG-CCACGCTCGGCAATGNNNNNNNNTTCGCTTTGCA 36295 | || ||| |||| || ||| |||| ||| | || |||| Sbjct 238819 TGTGTGTAGGTTAACGGCACCTTCGAACACAGTCGG-GATG---------TTGCACTGCA 238868 Query 36296 TGGCGGCCATGGATGCGTTGAACTCAGCCT-CTGCGCTGC--GGGACTGCATCCGTTCGT 36352 | ||||||| | || ||||| ||| | || ||| | ||||||||| || |||| Sbjct 238869 TTTCGGCCATTGCGGCATTGAA---AGCTTGCTCAGCTTCCTTGGACTGCATGCGCTCGT 238925 Query 36353 GCATGGCCATCAGGCGCTCCATTTTCTCGATGTCACACGCCGGATCGGCTGCGGCACG 36410 ||||||||| |||||||||||| ||||||||||| || | |||||||| || ||||| Sbjct 238926 GCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCGCAGGTTGGATCGGCGGCAGCACG 238983 >seq685 Length=77197 Score = 102 bits (112), Expect = 3e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCG 48973 ||||| |||||||| ||| || ||||| || || |||| | ||| | |||| Sbjct 14363 TGAAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCC 14304 Query 48974 GATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCA 49033 |||||| || || | |||||||| ||| | ||| | || ||||||||||| | Sbjct 14303 AGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGA 14244 Query 49034 TCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACA 49093 ||||||| |||||||||||| | |||||||| || || || || ||||| |||| ||| Sbjct 14243 TCGAGCAGGACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACA 14184 Query 49094 GCGATAAGAAGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 || | ||||| | | ||| | | || | ||| | ||| |||| |||| ||| | Sbjct 14183 CTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTA 14124 Query 49154 GCGT 49157 ||| Sbjct 14123 CCGT 14120 >seq29 Length=371730 Score = 87.8 bits (96), Expect = 6e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | | || | ||||||||||| |||| Sbjct 206209 TGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGC 206268 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || ||| | || |||||| | | |||| | || || ||||| || |||||||| | Sbjct 206269 AGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGG 206328 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | |||||||| ||||| || || || ||| |||| | | ||| | | Sbjct 206329 ATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATA 206388 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 | ||||||| |||||| | ||| | || | || |||| |||||||| Sbjct 206389 AAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 206439 >seq1130 Length=54118 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 49011 CGACCTACGCGAGTCCGGCGCCATCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCG 49070 |||||| ||||| ||||||||||||||||||||||| || ||||| || |||||| |||| Sbjct 33900 CGACCTGCGCGACTCCGGCGCCATCGAGCAAGACGCCGATATCGTCATCTTCGTGCACCG 33959 Query 49071 CGATGAAGTCTATTTCCCGAACAGC 49095 ||| || || || |||| | ||| Sbjct 33960 CGACGAGGTGGATAACCCGCAAAGC 33984 >seq1863 Length=4856 Score = 84.2 bits (92), Expect = 8e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 48916 AAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGA 48975 ||||| ||||| | |||| ||| | ||||| || || |||| ||||||||||| || Sbjct 1441 AAGCTTTTGGCGAAGGAGCTCGAAGTTCCGGTTGTCGCGATCTGTCAGCTCAACCGTGGT 1382 Query 48976 TGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATC 49035 ||| || | || ||||| ||| | || |||||| || |||||||| | || Sbjct 1381 CCCGAGCAGCGAACCGACAAGCGTCCGCAGGTCGCCGACCTTCGTGAGTCCGGATCGCTC 1322 Query 49036 GAGCAAGACGCGGACATCGTGATGTTCGTGTACCGC 49071 ||||| ||||| ||||| ||||| | |||||||| Sbjct 1321 GAGCAGGACGCCGACATGGTGATTCTGCTGTACCGC 1286 >seq28 Length=112092 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 21115 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 21057 >seq74 Length=23094 Score = 82.4 bits (90), Expect = 3e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| |||||| ||||| || || | || | |||||||| || | | || Sbjct 5900 TGGCCAAGGAGATGAACTGCCCTGTAGTCGCTCTTTCTCAGCTCAATCGTGAACTGGAAC 5841 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 |||||| | |||||||| | | ||| | || || |||||||||||| || | Sbjct 5840 GCCGCCCGAACAAGCGCCCTATCAACGCCGATTTGCGTGATAGCGGCGCCATCGAACAGG 5781 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 |||||||| | | ||||||||||||||||| || ||| |||| | | ||| | | Sbjct 5780 ACGCGGACCTGATCATGTTCGTGTACCGCGACGAGAAATATCACCCGGAGACCGAACACA 5721 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGG 49142 | ||||| | |||||| | ||| | ||| ||| |||| Sbjct 5720 AAGGCATTGCAGAAATCATCATCGGCAAGGCTCGTAACGG 5681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180411590870280