Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq98 141 9e-29 >seq98 Length=772300 Score = 141 bits (156), Expect = 9e-29 Identities = 487/747 (65%), Gaps = 18/747 (2%) Strand=Plus/Plus Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 |||||||||| |||| || | || ||||||||||| ||||| |||| | || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT--CCCAATTCCAA 16059 | |||||||||||||| ||||| | | | ||| ||||| | | || |||| |||| Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATA-TATTT-TGGTATAACCCAGTTCCTG 410217 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || |||| || || ||||| || ||||||||| ||| | | ||||| || || Sbjct 410218 CAGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGAT 410277 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | ||| || | || ||||| | ||| | ||||| || | ||||| || ||| Sbjct 410278 CAGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGAT 410337 Query 16180 TATATCTCTTACTAC-ACTATTTAACGGAGGGT-TTAATAAG-TGTTTAAACATTATACA 16236 || || | | || ||| | | || | || | || |||| | | | || Sbjct 410338 AAT-TCCATGA--ACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCA 410394 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||| |||||||||| || || || || || ||||| || ||| || || || Sbjct 410395 GGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCC 410454 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG-AAAAGAATA 16355 |||||| || |||| |||||| | ||| || || | || | | || | ||||| | Sbjct 410455 TGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCG-AACAGAAGCTCCCGCTGAAGAAAA 410513 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 | ||||| |||||||| || || ||||| || || | | |||| | || | Sbjct 410514 TGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAA 410567 Query 16416 tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 |||| ||||| | |||||||| || ||||| | |||||| |||| | Sbjct 410568 TCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGA 410627 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | | | |||||||| |||| |||||| ||||| || || | ||| ||| Sbjct 410628 ACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTT 410687 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || || || || ||||| ||||| || |||||||| || | ||||||| | | Sbjct 410688 CAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCT 410747 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 ||||||| || | |||| | |||||| || || || || || || || |||| Sbjct 410748 GTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAA 410807 Query 16656 AAAACGCAAGTATGTGTTTAATAAAAT 16682 |||| |||||||| || ||| |||| Sbjct 410808 AAAAAGCAAGTATATGAGAAATGAAAT 410834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462431031493000