Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq98 147 5e-30 seq404 111 3e-19 seq689 84.2 5e-11 >seq98 Length=772300 Score = 147 bits (162), Expect = 5e-30 Identities = 291/431 (68%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 |||||| || | ||| || | || ||||| | | ||||| |||| || ||||| Sbjct 409538 CTGGACAGCACCATTATTTATGACAGGGATTTTGGATTCGATTATTTTGGGTTTAAAACC 409479 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || || ||||| ||||| || ||||| || || | || || ||||| || || || Sbjct 409478 CTTGAAAAATCCTATCTGCTGAAAATAGAAGGACAAATTGTAGAACGCCCGCAACATTTG 409419 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 || ||||| || || || ||||||||||| || || || || || | | | | ||||| Sbjct 409418 TTTATGCGTGTTGCCGTAGGGATTCACAAAGAAGATATTGAAAGTGCGATTGCAACGTAT 409359 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACC 249021 | | |||||||| |||||| | || ||||| || || || | || || || | |||| Sbjct 409358 AACCTGATGAGTGAGCGCTGGTTTACGCATGCAACCCCAACTTTATTTAATGCAGCTACC 409299 Query 249022 GTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGC 249081 || ||| || || |||||| | || ||||||| |||||| | | || || Sbjct 409298 CCTAAACCTCAAATGTCTTCCTGCTTTTTACTGACCATGCAGGACGACAGTATTGAAGGA 409239 Query 249082 ATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTC 249141 ||||| || || | ||||| || || || ||||| || ||| || || || ||| | Sbjct 409238 ATTTACGATACTTTAAAACAAACCGCTAAAATTTCACAAAGCGCAGGTGGTATTGGTTTA 409179 Query 249142 TCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT 249201 | || |||||||| || | ||| || || || || ||||| ||| ||| || Sbjct 409178 AGCATCCATAACATCCGTGCCACGGGATCTTATATTGGTGGAACAAACGGGACCAGCAAT 409119 Query 249202 GGTATCGTACC 249212 || || ||||| Sbjct 409118 GGGATTGTACC 409108 >seq404 Length=78127 Score = 111 bits (122), Expect = 3e-19 Identities = 308/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | || ||||| || | || |||||||||||| | |||||||||| Sbjct 49440 CGCAAGGGAGCCTTTGCCATCTACCTCGAGCCATGGCACGCCGATGTCATGGAGTTCCTT 49381 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| | |||||| |||| || || ||| | || ||||||||||| |||| ||| Sbjct 49380 GACCTTCGCAAGAACCACGGAAAGGAAGAGATGCGTGCCCGTGACCTCTTTTACGCCCTC 49321 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||||| ||||| | || ||| || ||| ||||| ||| ||| ||||| || ||| | Sbjct 49320 TGGGTATCCGATCTCTTTATGGAGCGTGTCGAGGCCAACGCCGAGTGGACACTCTTTTGT 49261 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAG 249504 || ||| ||||| | ||| ||| || | ||| ||| | ||| | Sbjct 49260 CCCAACGAGGCCCCAGGTCTCGCTGATTGCTGGGGAGACGAGTTCCGCGCTCTCTACACC 49201 Query 249505 AAATACGAATCCAAC---GGCATCG---GCAAGACAATCAAGGCTC--GGACCCTTTTTG 249556 ||||| ||| | || ||| ||||||| |||||||| | | | || || Sbjct 49200 CGCTACGAGGCCACCCCAGGTCTCGGTCGCAAGACCATCAAGGCCCAAGATCTCTGGTTC 49141 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | ||||| ||||| ||||| || || ||| | | ||| ||||| | Sbjct 49140 TCCA--TTATCGAGTCGCAGATTGAGACTGGCACCCCATATATCCTCTACAAGGACGCCT 49083 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||| |||||| ||||||| | |||| || ||||||| | || || ||||| ||| Sbjct 49082 GCAATGCCAAGTCAAACCAACAGAATCTCGGCACCATCCAGTGCTCCAACCTCTGCACAG 49023 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || | | |||||| | || || || | ||||| |||||||| || Sbjct 49022 AGATTGTCCAATACACCTCTCCCGACGAAGTGGCCGTGTGCAACCTCGC 48974 >seq689 Length=46727 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| |||||| | || | || || |||||||||||||| | ||| | Sbjct 18615 ACACCAGACTTGGCGTACTCTGAAACCTTGTTTTCGAAAAAGTTGGTCTTGCGCTGCAAC 18556 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAG 157362 || ||||| |||||||| |||||||||||||| ||||||| | ||| | ||| || || Sbjct 18555 GAGATCATCTCCATCCAGTCGAATGGGTTGGCAGAGTTGTAGATCTTTTTGTAGCCGAG 18497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073573724363840