Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq593 125 6e-24 seq456 109 4e-19 seq420 100 2e-16 seq48 100 2e-16 seq1623 98.7 8e-16 seq2393 84.2 2e-11 >seq593 Length=58250 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| ||||||||||||||| || ||| | || || Sbjct 29813 ACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCG 29754 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| |||||||| || || | || ||||| ||||| || | |||||||||||| Sbjct 29753 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGG 29694 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||| ||||||| |||||| |||||| Sbjct 29693 ATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCTTG 29634 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 29633 CCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || |||||| |||||||||||||| || ||| | || || Sbjct 29130 TACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 29071 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| |||||||| || || | || ||||| ||||| || | || |||||||| Sbjct 29070 GAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTG 29011 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | |||| ||||| ||||||| ||| || ||||| Sbjct 29010 GATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTT 28951 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 28950 ACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||| ||||||||||||||| || ||| | || || Sbjct 29585 ACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 29526 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| || | | ||||| ||||| || | || |||||||| | Sbjct 29525 AGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGA 29466 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| ||||| || |||| ||||| |||||| Sbjct 29465 ATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGTCTTG 29406 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| ||||| |||||||| Sbjct 29405 CCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || || ||||| |||||||||||||| || ||| | || || Sbjct 29358 TACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 29299 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| |||||||| || || | || ||||| ||||| || | || |||||||| Sbjct 29298 GAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 29239 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | |||| ||||| || |||| ||| || ||||| Sbjct 29238 AATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTT 29179 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||||||||| Sbjct 29178 TCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 >seq456 Length=67341 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| || |||||||| || || ||| |||| ||| Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 21433 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| |||||||| || ||||| || || || ||||| || | ||||||||||| Sbjct 21434 AATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 21493 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||| ||||| | ||| || ||||| Sbjct 21494 ATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTT 21553 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || | |||||| |||||||| ||||||||| Sbjct 21554 CCTGTTAAAGTCTTAACAAAGATCTGCATGTTG 21586 >seq420 Length=40905 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| |||||| ||||||||||||||| || || |||| || Sbjct 14020 TACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCCTC 14079 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| ||||| || || || | | ||||| ||||| || | || |||||||| Sbjct 14080 TAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 14139 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | |||| ||||| ||||| | || || ||||| Sbjct 14140 GATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGTGATGGTCTT 14199 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| |||||||||||||| Sbjct 14200 GCCAGTCAATGTCTTGACAAAGATTTGCAT 14229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || || ||| || || ||||||||||| || ||| | || || Sbjct 13564 TACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 13623 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| || ||||| || || | || ||||| ||||| || | ||||||||| || Sbjct 13624 GAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTG 13683 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | | || ||||| ||||||| |||||| ||||| Sbjct 13684 AATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTT 13743 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||||||| || || || ||||| Sbjct 13744 GCCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| ||||||||||||||| || |||| | || || Sbjct 13793 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCG 13852 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || || | || ||||| ||||| || | || |||||||| Sbjct 13853 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 13912 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || || ||||||| || || ||||| Sbjct 13913 ATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTTT 13972 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || || || ||||| Sbjct 13973 CCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 >seq48 Length=44992 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || || |||||| |||||||| |||||| || ||| |||| || Sbjct 22385 TACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTC 22326 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||| |||||||| || || | || || || ||||| || | ||||||||||| Sbjct 22325 GAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTG 22266 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | | || ||||| ||||||| || || ||||| Sbjct 22265 AATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCTT 22206 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||| ||||| Sbjct 22205 TCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| ||||||||||||||| || | |||| | || || Sbjct 22612 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCG 22553 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | | ||||| ||||| || | || |||||||| Sbjct 22552 AGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22493 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||| || |||| ||| || |||||| Sbjct 22492 ATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTCTTG 22433 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| || || || |||||| Sbjct 22432 CCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || || |||||| |||||||||||||| || ||| | || || Sbjct 22841 TACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 22782 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || ||||| || | || ||||| ||||| || | || |||||||| Sbjct 22781 GAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 22722 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | | || ||||| ||||||| ||||| ||||| Sbjct 22721 AATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTT 22662 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||||||| || || || ||||| Sbjct 22661 GCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 >seq1623 Length=5066 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| || |||||||||||| || ||| | || || Sbjct 120 ACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 179 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| |||||||| || || | || ||||| ||||| || | || |||||||| Sbjct 180 AGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGG 239 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || ||||| ||||||| ||| || ||||| Sbjct 240 ATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACCTCCAAGGTGATGGTCTTA 299 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||||||||| Sbjct 300 CCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq2393 Length=1004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || ||| ||||| ||||||||||||||| || |||| |||| || Sbjct 889 TACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCTTC 948 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 ||||| ||||||||||| || | | ||||||||||| || | || ||||||| Sbjct 949 GAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGTGGGATTCCTTCCTTGT 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395007766219105