Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq98 170 2e-37 seq689 86.0 6e-12 >seq98 Length=772300 Score = 170 bits (188), Expect = 2e-37 Identities = 574/883 (65%), Gaps = 18/883 (2%) Strand=Plus/Plus Query 13911 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 14029 | |||||||||||||| ||| ||| || ||| | | | ||| | |||| ||||| Sbjct 410160 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 410218 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 14089 || |||| || |||| ||||||||||| || ||||| | | |||||| || || Sbjct 410219 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 410278 Query 14090 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 || || || | || || | |||||| ||||| || || || ||| ||| Sbjct 410279 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 410338 Query 14150 ATAATCGTAATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 14207 || || | ||| | | || |||||| || |||| ||| | || | Sbjct 410339 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 410396 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 410397 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 410456 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 14327 |||||| |||| |||||| ||||| || || | | ||| ||| ||||| || | Sbjct 410457 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 410516 Query 14328 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14387 | || ||||| || || || | || ||||| |||| ||| | | |||| Sbjct 410517 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 410570 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 | |||||||| | |||||| || | | || | || || | |||| || | Sbjct 410571 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 410630 Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 410631 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 410690 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 |||| ||||||||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 410691 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 410750 Query 14568 C--CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 | | || | | || | | | || | |||||||| || || || ||||| || ||||| Sbjct 410751 CTTCGCTCA-TGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAA 410808 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT-CGG 14684 ||| || | ||| | ||| || | |||| | | | | || | ||| | | Sbjct 410809 AAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTT 410868 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 || || | |||||| || | ||| ||| | ||||| ||||| || || || |||| Sbjct 410869 CT-GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTAT 410927 Query 14745 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||||| |||| ||||| ||| ||||| |||| ||||| Sbjct 410928 ACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq689 Length=46727 Score = 86.0 bits (94), Expect = 6e-12 Identities = 197/296 (67%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| || || || | || || || | || || | ||||| ||||| || || Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 |||||||||||||| || || || | |||||| |||| | ||| || || || || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAA 18197 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || ||||| || || |||||||| | || || || ||||||| || || || Sbjct 18196 GATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGA---CTTGGAATTTGA 18140 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 |||||| | ||||| |||| || || || | | | || || || || ||||| Sbjct 18139 GATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATT 18080 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 || |||| |||| || | | | ||| |||||||| || | ||| |||| Sbjct 18079 GAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482261159373400