Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq420 111 1e-19 seq593 102 6e-17 seq48 100 2e-16 seq2393 84.2 2e-11 >seq420 Length=40905 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||||||| |||||| || || || ||||||||||||||||||| Sbjct 14002 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 14061 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | || || | ||| || || ||| |||| |||||||||||||| || Sbjct 14062 AAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGG 14121 Query 18218 CACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || | | ||| | |||||| | | | ||||| | |||| Sbjct 14122 GATTCCTTCCTTGTCTTGGATCTTGGT-CTTGACGTTGTCGATGGTGTCTGAGCCCTCGA 14180 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| | ||||| |||||||| || ||||| ||||||||| Sbjct 14181 CCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 14230 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||||||| |||||| || || |||||||| ||||||||||| | Sbjct 13546 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGA 13605 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||| ||||| ||| ||||||| | ||||||||| || Sbjct 13606 GAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGG 13665 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 13666 AATACCCTCCTTATC 13680 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| |||||| || || || ||||||||||||||||||| Sbjct 13774 TCCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 13833 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| || | ||| ||||| ||| |||| || | ||||||||| || Sbjct 13834 TAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGG 13893 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 13894 GATTCCTTCCTTGTC 13908 >seq593 Length=58250 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||||| |||||| || ||||| ||||||||||||||||| | Sbjct 29375 CCTCCACGAAGGCGGAGTACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 29316 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||| || || ||| |||| || | ||||||||| || Sbjct 29315 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 29256 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| ||| | |||||| | | | |||||| ||| Sbjct 29255 ATTCCTTCCTTGTCTTGAATCTTGGT-CTTGACATTGTCGATGGTGTCAGATCCCTCAAC 29197 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| | || || ||||| || |||||||| |||||||| Sbjct 29196 TTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | ||| |||| || || || ||||| ||||||||||||||||||| Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||| || || || | || |||||||||||||| || Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| ||| | ||| || | | | |||||| |||| Sbjct 29483 ATTCCTTCCTTGTCTTGAATCTTGGT-CTTAACATTGTCGATGGTGTCAGATCCCTCGAC 29425 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || | ||||| || | || |||||||| |||||||| Sbjct 29424 TTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 >seq48 Length=44992 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| ||||| || || || ||||||||||||||||||| Sbjct 22631 TCCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGA 22572 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| || ||| || | || ||||| ||| |||| |||||||||||||| || Sbjct 22571 CAATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGG 22512 Query 18218 CACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || | | ||| | |||||| | | | ||||| | |||| Sbjct 22511 GATTCCTTCCTTGTCTTGGATCTTGGT-CTTGACATTATCGATGGTGTCTGAGCCCTCGA 22453 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | ||||| || | || || || ||||| ||||| Sbjct 22452 CTTCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||||||| |||||| || || || ||||| ||||||||||||| Sbjct 22175 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGA 22116 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||| ||||| || | || || | ||||||||| || Sbjct 22115 TAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGG 22056 Query 18218 CACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || | | ||| | |||||| | | | || ||| |||| Sbjct 22055 GATTCCTTCCTTGTCTTGGATCTTGGT-CTTGACGTTGTCGATGGTATCAGATCCCTCGA 21997 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| |||||||| ||||| ||||||||||| Sbjct 21996 CCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCAT 21948 >seq2393 Length=1004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 18091 TTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGT 18150 ||| || |||||| || || | ||||||| |||||||| ||||| ||||||||||||| Sbjct 864 TTTATTGTCCTCCACGAAGGCGGAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGT 923 Query 18151 AGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGAT 18210 |||||| | || || ||||| | ||| || || || | || ||||||||||| | Sbjct 924 AGTCGGAAAGAGTGCGACCGTCTTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGT 983 Query 18211 CCACGGGCACGCCTTCCTT 18229 | || | |||||||| Sbjct 984 CGGGTGGGATTCCTTCCTT 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379279251313725