Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq404 91.5 3e-13 seq362 89.7 1e-12 >seq404 Length=78127 Score = 91.5 bits (100), Expect = 3e-13 Identities = 170/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 ||||| || | ||||||||||| || | ||| || ||||| || ||||| || || Sbjct 49577 CCTCCGGCCGACTTGGAGATGAGGGCGCATTGCTTGAGGGTATCGTAGATACCATCGATC 49636 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 ||||| | | | |||||||||||| || | ||| || | | || || | Sbjct 49637 GAGTCATCCTTCATCTGGACAAGGAAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAG 49696 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 ||||| || || |||| || |||||||| ||| || || | | ||||| || || Sbjct 49697 TTAAAGAGGGTTGGGGTGGCGTGGGTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCG 49756 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 ||| ||| | ||||| | ||||| || || | || |||||||| | ||||| ||| Sbjct 49757 ATGGCAGCGTCAATGTCGGCGCCGTGGATACCAAGAGAGACACGCATGAGCATGTGCTGG 49816 Query 95032 GGGCGCTCAA 95041 || ||||||| Sbjct 49817 GGACGCTCAA 49826 >seq362 Length=339261 Score = 89.7 bits (98), Expect = 1e-12 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||| ||| |||||||| ||| || | || |||||| || | | | |||| Sbjct 148283 AATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGAGATAGAACATATG 148224 Query 35582 GCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTAATGGAGAATTGTCGT 35639 || ||||| || ||||| || || | || |||||||| ||| | ||| || || | Sbjct 148223 GCACTTCCACCCTGCCA--TGCCTTTTTCCAGTTTTATGTAGCTGACGGAAAACTGAGCT 148166 Query 35640 GCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCAT 35699 | ||| | ||||||||||| | |||| | |||| || || || || ||||| || | Sbjct 148165 GTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAACATTGCCTCCT 148106 Query 35700 ACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAGTTTATC 35758 | | | |||||| || | || ||| | | || || | ||||||| |||||| Sbjct 148105 ATGCCTTACTGACTATGATGGTTGCACAGGTTTG-CGGACTGGAGTCGGGAGATTTTATC 148047 Query 35759 CTCACTCTTGGTGACGCACACATTTATAATACCCACATTGA 35799 | || ||||| || || ||| ||||||||| ||| ||||| Sbjct 148046 CATACCCTTGGCGATGCCCACCTTTATAATAACCATATTGA 148006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989406429974775