Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq367 800 0.0 seq2269 484 2e-132 seq685 224 2e-54 >seq367 Length=135625 Score = 800 bits (886), Expect = 0.0 Identities = 1038/1425 (73%), Gaps = 26/1425 (2%) Strand=Plus/Plus Query 1433 TCGAACTGCGCGAACCTCACGACCTCCTCCCCGATCATCTCATTAACCTGCTGCAGGCGC 1492 || |||| | |||||| || ||||| || || | | ||| || ||||| ||| | | Sbjct 44940 TCAAACTCCTTGAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGCCTC 44999 Query 1493 GTCTGCATTGGCGCGAGTTCCAAGCTTGCCCAGACCGCTGCTGCGTCGCTAATGGATCCG 1552 | ||||| ||| | || || | ||||| ||| | || || || | | || || Sbjct 45000 GCCTGCAACGGCTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGACCCA 45059 Query 1553 AACCCACCAGCGTTCTGCGGCACCACCCCCATCAGCTGCGGATAGACCCGCAGGCCGGCG 1612 || || || |||||||||||||| | ||||||| |||||| | |||| | ||| Sbjct 45060 AAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCG 45119 Query 1613 AGCTGGTCGTCGCGGCTGATGTTCTTGATTGAGCCGAACTCGTCCTTGGCCGCCACCTCG 1672 ||| | ||||| ||||||||||| ||||| |||| ||| |||||||||||||| |||||| Sbjct 45120 AGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCG 45179 Query 1673 CTGACCGGAATCAGTTGGATCCCCTCCTTCTTCCCGTTCGGCGCGTAGACGAACAGGTTG 1732 || ||||| || || || || || || ||||| || ||||||||| || ||||||||| Sbjct 45180 CTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTG 45239 Query 1733 CGGAAATTGCCAGGCCCCTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTCGATGTCTTCC 1792 || || ||||| ||||| |||| | ||||||| || |||||||| | ||||||||| || Sbjct 45240 CGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCT 45299 Query 1793 TCATTCTGTGCGGCGTCGGTCATGTAGAGGATGAAGCCGGCGTGGCTGCCGTTGTTGTAG 1852 || ||||| || |||||||||||||| || ||||| ||||| |||||||||||||||||| Sbjct 45300 TCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAG 45359 Query 1853 TACTTACGCCGGAACAGCGTGGCCGACTCGTTCAGCAGGGCGCTCTGTAGGGCGCAGAAC 1912 ||||| ||||||||||||||||| |||||| ||||| ||||| || || || | | Sbjct 45360 TACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGC 45419 Query 1913 CACTCCGGCACTCCGTAGATTTCCTGATTGATGTCGGCCTCGCGCAGTTGGATCACGCTG 1972 |||||||||| |||||||||||||| ||||| ||||||||||||| ||| | Sbjct 45420 CACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGAA 45479 Query 1973 CCCTTCTCGAATTCGTGCTCATCCTTCCAGCTGCGCACCTGGTAGAACGTCTCCAGATCG 2032 || | ||||| || || |||||||||| ||||||||||| | ||||||| || Sbjct 45480 CCGGGGGCAAATTCATGTTCGTCCTTCCAGCCACGCACCTGGTAATAGGTCTCCATGTCC 45539 Query 2033 GTGCCGCGGCGCATGTACTTGGCCAGCGGCGCCTGCAGCGGCATCCGCGTACCCAGGCGA 2092 || |||||||||||||| ||||| || | | |||| ||| | || | || Sbjct 45540 ACACCCCGGCGCATGTACTTCGCCAGTGGAGGCAGCAGGCCCAT-GGTGT----TGCGGA 45594 Query 2093 GAACGAGGCTGC-----TCGAGGTATGCCG-AGCCAAATGTCAGCCAGTCCAGGGAGAAC 2146 | | | | ||| || ||||| || | |||| | ||||||||||||| |||| Sbjct 45595 GCATGTTGTTGCGCTTTTCCAGGTA-GCAGTTGCCACACCAGAGCCAGTCCAGGGCGAAC 45653 Query 2147 TGCTCGAACGTCGCCCGGCTGAGCAGGCGGTGCGGGATGAAGGTCTTGGCCAGCATGTTG 2206 ||||| || | || || | ||| ||||| || | ||| || ||| ||||||||| Sbjct 45654 TGCTCAAAGGCTTGGCGACTCAACAGCCGGTGGGGAACGAACGTGCGGGCAAGCATGTTG 45713 Query 2207 CGCTTGAACTTCAGGCCCGACTGCAGATAAACGCTCGACCCCACCGACTTGGCCAGCCCC 2266 |||||||| |||| ||||||||| || || ||||| | || || || ||||| || Sbjct 45714 CGCTTGAAGTTCA-GCCCGACTGGAGGTACACGCTGGCCCGGGTCGTTTTCGCCAGGCCG 45772 Query 2267 TCCATAGACAGCGGCGGCTCGTACCACCGCCCGTTCGGCCAGCACTCGAGATAGTCGAGG 2326 ||||| |||| ||| | || |||| || || || | ||||||||| || ||||||||| Sbjct 45773 TCCATGGACATCGGTGTTTCAAACCAACGGCCATTGGCCCAGCACTCCAGGTAGTCGAGG 45832 Query 2327 ATGCCCCGGCCGTCGAGCACCGGCATCGGATCACCGAAGGTGAAGGCCTCGGCACGGCC- 2385 || |||||| || | ||| || ||||||||||| ||||| || || | ||||| Sbjct 45833 ATCTCCCGGCTATCCAACACGGGAGCGGGATCACCGAAAGTGAACGCTTCAAC-CGGCCC 45891 Query 2386 --ACCCTGGCGCGGGATGAACTCGCCTTCCTGGGCGGACTGGACTGTAACTGGCTGCTGG 2443 || | | |||| | || || ||||| || | ||| | || | |||| Sbjct 45892 GGACTCAG--GCGGCAGCAAATCCCCTTCAACGGGTGGCTGAGCGGTGGCCAGCTGGGTT 45949 Query 2444 CGGCGGTGGCTGCGACGTTTGCTCATCCGAAAATCTCCATGCGGCCGGTATTCGCGGGGG 2503 | ||| | |||| |||||||| | | |||||| ||||| ||||| | || Sbjct 45950 CCGCGCT------TACGTCTGCTCATCAGTAGGACTCCATAAATCCGGTGTTCGCCGTGG 46003 Query 2504 TCTGCCCCTCGAGCGGCTCGTTTTGCAATGCGTGGAATAGCGCCCAGGCCAGATCGGCGT 2563 ||||||| || || || ||||| |||| |||||||| |||||||| || || ||||| | Sbjct 46004 TCTGCCCTTCAAGGGGTTCGTTGTGCAGCGCGTGGAACAGCGCCCACGCTAGGTCGGCAT 46063 Query 2564 GGCCGGTGTTGTCGTTGCGGCCGGCGGTATAGGTGAACTGGCGCCCACCGGCCGTGATGG 2623 |||| || | ||| |||| ||||| || || |||||| |||||| ||| ||||| | Sbjct 46064 GGCCCGTCTCGTCTGTGCGACCGGCCGTGTAAGTGAACATGCGCCCGGAGGCGGTGATTG 46123 Query 2624 TCTTGCGGATAGCCATCAGCGCCTGGGCCAGGTCGGTCCAGCCGGCGTCGAATTCGAGGC 2683 | |||||||||||||||| | ||| |||| || |||||||| || ||||| || || | Sbjct 46124 TTTTGCGGATAGCCATCAATGACTGCGCCATATCCGTCCAGCCCGCATCGAACTCCAGCC 46183 Query 2684 GGCCGTTCTTGATCACTGACCAGGCCTTCATGACCAACTGCGTCTTCACCTCGGGCGAGT 2743 |||||| ||||| || | ||||||| |||| | || || || ||||| |||| Sbjct 46184 TGCCGTTTTTGATGACGTCGTAAGCCTTCAGCACCAGGCGGGTTTTGACTTCGGGTGAGT 46243 Query 2744 AGCTGAAGGTGCGCACCCCCGGGAAGAACTGGCGCACCAGCTGCGCGACGCCAGAGCCCA 2803 ||||||| ||| | |||||||||||| |||||||||||| ||||| || ||| Sbjct 46244 AGCTGAACGTGGTGATGTTCGGGAAGAACTGCTTCACCAGCTGCGCCACGCCGGAACCCG 46303 Query 2804 TGCCGGTGGTGTCGACGCCGATGTAGGTGACCCAGTAGCG-CTGG 2847 |||||||| | |||| ||||||||||| ||||||||||| |||| Sbjct 46304 TGCCGGTGATATCGATCCCGATGTAGGTCACCCAGTAGCGTCTGG 46348 >seq2269 Length=4732 Score = 484 bits (536), Expect = 2e-132 Identities = 610/824 (74%), Gaps = 29/824 (4%) Strand=Plus/Minus Query 31778 CCTGGCCGGTGTCCCGGGCACCCTGCTGGACCTGTTCACCCGCGACCAATACATCCGC-T 31836 |||||||| ||| || ||| | ||||||||||||| || | || |||| |||| | Sbjct 2295 CCTGGCCG----CCCTGGTACCGTCATGGACCTGTTCACACGTGCGCAGTACA-CCGCAT 2241 Query 31837 TCCATGGAACGGAGCCTCCCGCCGGTTGGCGGGAGGCAACCCCGGAGGAAATCCGCCGCG 31896 |||| || | ||||| || |||||||||| ||||| || | | || || ||||| | Sbjct 2240 TCCACGGCAAAGAGCCGCCGTCCGGTTGGCGCGAGGCTACGGCCGTTGATATTCGCCGGG 2181 Query 31897 CCGCCGGCG----GGCGCCGACCGGATGCCGTGTTCATCAGCTCGCCCTGCAAAGGCGCC 31952 | || ||| | |||||| | || ||| |||||||||||||| || ||||||||| Sbjct 2180 CAGCTGGCAACGAGTCGCCGAAC--AT--CGTTTTCATCAGCTCGCCTTGTAAAGGCGCC 2125 Query 31953 AGCGGCCTGCTGTCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGCGCTGAACGAGTTG 32012 || |||||| || | |||| || | || || |||||| | |||||| || Sbjct 2124 TCGGGTCTGCTGAGCGAATCGCTGAGTAAAACCGCCAAATATCAGGCGTTAAACGAGCTG 2065 Query 32013 ACGCTGCGCTGCATCTGGCTGATGGGCGAGGCATGGGCTGATGACCCGGTGCCGCTGATC 32072 ||||| |||||||| |||||||||| |||||| ||||| ||| ||||||| || ||| Sbjct 2064 ACGCTTCGCTGCATATGGCTGATGGCCGAGGCCTGGGCCGATAACCCGGTCGACCTAATC 2005 Query 32073 GTCTTCGAGAACGTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCTGGACCAGATCAAC 32132 || ||||||||||| ||||| || || | |||||||| |||||||| |||||||||||| Sbjct 2004 GTGTTCGAGAACGTGCCGCGCCTAGCCACGCGCGGCCGACACCTGCTCGACCAGATCAAC 1945 Query 32133 AGCCTGCT-CGGTGGCTTCGGCTACGCCGTGGCGGAAACCACTCACGACTGCGGCGAGCT 32191 |||| | | | ||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 1944 CAGTTGCTGCAGCAG-TTCGGTTACGCCGTGGCCGAAACCACGCACGACTGCGGCGAGCT 1886 Query 32192 GGGCGGTCTGGCCCAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGGCACGTCGAGAAAGT 32251 ||| || ||||| ||| || ||||||||||||||||| ||||| ||| | ||||| || Sbjct 1885 GGGTGGCCTGGCGCAGAGCCGCAAGCGCTTCCTGCTGGTAGCGCGCCACATGGAGAAGGT 1826 Query 32252 GCCGCCCTTCCTGTACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTCGGCGACATCCTCGG 32311 ||| || |||||||| ||||| |||||||| |||| ||||| ||||||||| | || || Sbjct 1825 GCCACCGTTCCTGTATGAGCCCCAGAAGAAGCGCCTACGCGCGGTCGGCGACGTGCTGGG 1766 Query 32312 CCGCATGCCGCTGCCCGGCGATATCGACGCCGCCGGCCCGATGCACCGTGTGCCATCCCT 32371 | | ||||| | || |||||| | || | |||||||||||| || | || || Sbjct 1765 CAGAATGCCATTCCCTGGCGAT---GCTGCTGGCGGCCCGATGCATCGCATCCCGCGACT 1709 Query 32372 GCAGTGGAAGACCTGGGTTCGCCTGGCACTGGTGCGAGCCGGCAGCGACTGGCGCAGCCT 32431 ||||||||| || ||||| ||||| || | || |||||||| |||||||||||||| Sbjct 1708 GCAGTGGAAAACGTGGGTACGCCTAGCTTTCGTTGAGGCCGGCAGTGACTGGCGCAGCCT 1649 Query 32432 GAACGACCTCGCCGTCGAGGACGGCTACCTGCGCG---ATCTGATCATCGTCCCGAAATA 32488 |||| | || ||||| |||||||| ||||| ||| | |||||| | ||||| | Sbjct 1648 GAACAAGCTGGCCGTAGAGGACGGGCACCTGAGCGAATACCTGATC--CTGCCCGAGCGA 1591 Query 32489 CCGGGCTGGCTACATGGGCGTGCACGGTTGGAACGACAGCA--CGGGCACCATCGCCGGT 32546 | || ||| | ||||| ||| ||| ||| |||| | ||| || | |||| Sbjct 1590 -AGCCATGATTACCTCGGCGTCAACGCCTGGGACG--AGCATGCCGGCGCCGTGTCCGGA 1534 Query 32547 CGCAGCAGCCCCACGAACGGCGCATTCTCTGTCGCGGACCCGCG 32590 ||| ||| ||||| | ||||| | ||| ||||| || || || Sbjct 1533 CGCGGCACGCCCACCACTGGCGCCTACTCGGTCGCAGATCCACG 1490 >seq685 Length=77197 Score = 224 bits (248), Expect = 2e-54 Identities = 494/732 (67%), Gaps = 9/732 (1%) Strand=Plus/Plus Query 31728 TGCCTTGGTGGCATCGACGTGGACCCGGCCGGCCTCCGCGACTTCGAGCGCCTGGCCGGT 31787 ||| | |||||||||||||| || |||| | |||| || || || ||||| ||| Sbjct 6718 TGCATCGGTGGCATCGACGTCAACGCGGCAGCAATCCGGGATTTTGAACGCCTCAGCGGA 6777 Query 31788 GTCCCG-GGCACCCTGCTGGACCTGTTCACCCGCGACCAATACATCCGCTTCCATGGAAC 31846 || || || ||| | || || || ||| || || || | || |||||| || | Sbjct 6778 -TCTCGCGGAACCGTCCTCGATCTCTTCGATCGTGATCAGTTCAAGGACTTCCACGGCAA 6836 Query 31847 GGAGCCTCCCGCCGGT-TGGCGGGAGGCAACCCCGGAGGAAATCCGCCGCGCCGCCGGCG 31905 ||||| || || || ||||| || || || ||| || ||||| | || ||||||| Sbjct 6837 AGAGCCGCC-GCGGGAGTGGCGCGAAGCCACTGCGGCAGATATCCGTCATGCGGCCGGCG 6895 Query 31906 GGCGCCGACCGG-ATGCCGTGTTCATCAGCTCGCCCTGCAAAGGCGCCAGCGGCCTGCTG 31964 | || ||| || ||| ||| || | ||||||||||| |||||| |||||| Sbjct 6896 G-CGAATACCCCCATATCGTCTTCCTCTCGGCCCCCTGCAAAGGGTTCAGCGGACTGCTG 6954 Query 31965 TCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGCGCTGAACGAGTTGACGCTGCGCTGC 32024 ||||| || ||| ||| | ||||||||||| ||||| | || || || || Sbjct 6955 TCGGAAAACCGCAGCAAGACCGCCAAGTACCAGGCATTGAACCGTCTAACCCTACGTGGC 7014 Query 32025 ATCTGGCTGATGGGCGAGGCATGGGCTGATGACCCGGTGCCGCTGATCGTCTTCGAGAAC 32084 | ||||||||| ||||| | ||||||| | ||||||||| ||||||||| Sbjct 7015 GTATGGCTGATGCTGGAGGCCTTCCAGGATGACCTCCCGGAGCTGATCGTTTTCGAGAAC 7074 Query 32085 GTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCTGGACCAGATCAACAGCCTGCTCGGT 32144 || || || | || || ||||| | ||| || || |||||| ||||| | Sbjct 7075 GTGCCTCGCATCCAGAATCGTGGCCGCCGCCTCCTCGATCAGATCGTTCAACTGCTGCGC 7134 Query 32145 GGCTTCGGCTACGCCGTGGCGGAAACCACTCACGACTGCGGCGAGCTGGGCGGTCTGGCC 32204 ||| ||| |||||| || || || || ||||| ||||||||||| || || || || Sbjct 7135 CGCTACGGGTACGCCACTGCCGAGACGACGCACGATTGCGGCGAGCTCGGTGGCCTCGCT 7194 Query 32205 CAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGGCACGTCGAGAAAGTGCCGCCCTTCCTG 32264 || || || || || |||||||| || | || || || | || |||||| |||| | Sbjct 7195 CAATCCCGTAAACGATTCCTGCTCGTCGGCCGCAACATCAACAAGGTGCCGGACTTCATC 7254 Query 32265 TACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTCGGCGACATCCTCGGCCGCATGCCGCTG 32324 || || || | ||| ||| || || | || ||||| ||||| ||||| ||||| || Sbjct 7255 TATGAACCTGTGAAAAAGTCGCTTCGTTCGGTAGGCGATATCCTGGGCCGTATGCCTCTC 7314 Query 32325 CCCGGCGATATCGACGCCGCCGGCCCGATGCACCGTGTGCCATCCCTGCAGTGGAAGACC 32384 |||||| || |||| || ||| || |||||||| || || |||| | ||||| Sbjct 7315 CCCGGCCATTTCGA---CGGCGGTCCAATGCACCGCGTACCGAACCTGTTTTTCAAGACT 7371 Query 32385 TGGGTTCGCCTGGCACTGGTGCGAGCCGGCAGCGACTGGCGCAGCCTGAACGACCTCGCC 32444 ||| | | ||||| | || ||| |||| |||||||| |||||| || Sbjct 7372 TGGTTGAGGCTGGCCTTCGTTGAAGCGGGCAAGGACTGGCGATCGCTGAACAGGCTGAAT 7431 Query 32445 GTCGAGGACGGC 32456 ||||| |||||| Sbjct 7432 GTCGAAGACGGC 7443 Score = 118 bits (130), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33116 CACCTGGCACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCC 33175 ||||||||| | || || ||||| || |||||| ||||| || ||| || |||| || Sbjct 8376 CACCTGGCATCGTCCCTTCACCACGCTCGAACTCTGTGCGCTCCAAAGCCTGATCGAGCC 8435 Query 33176 CGAAGAGCAGTTGGTCCTCGACGGCCTGAGCGACAGCGACTGGCGCGAGCGGATCGGCAA 33235 |||||| | ||| |||||||| || ||| | |||||| | |||||||||||||| Sbjct 8436 GGAAGAGTATCTGGAACTCGACGGGCTCTCCGATGGTGACTGGAGGGAGCGGATCGGCAA 8495 Query 33236 TGCGGTTCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTT 33295 ||||| || |||| ||| ||||| || |||| || | | | || |||||||| | | Sbjct 8496 CGCGGTGCCCCCGGATGCAGCCGAAGCGATCGGCGAGGCGTTCGGTACCACCCTACTCCT 8555 Query 33296 GG-CTGAGGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGTGCG 33346 || ||| || ||| |||||| | || | | || || |||||||| || Sbjct 8556 GGTCTGGAGCGGGC-AGACCTACTCAATCGGCAAAACCCCAATCTGGGTACG 8606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113715484903020