Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq510 122 3e-23 seq215 84.2 7e-12 >seq510 Length=18522 Score = 122 bits (134), Expect = 3e-23 Identities = 610/956 (64%), Gaps = 47/956 (5%) Strand=Plus/Plus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| || || | ||| ||| ||| ||||| || || ||| ||| |||||| Sbjct 13928 TCTGCTTCTGCCGGAAGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAG 13987 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC-CG 33523 | ||||| || || |||||||| || | | | ||||||| || | || Sbjct 13988 TCCACCCACGTGAGTGTGGCCAGTTCTACTTCTGCACGGTTTTTCCA----GCTCTTACG 14043 Query 33524 ATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCT 33583 || || | |||| ||||| || || ||||| | || |||| ||| ||||| || Sbjct 14044 GTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGA 14103 Query 33584 GTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG-C 33642 |||||| || || ||| | | | ||||| || ||||| | ||||| | Sbjct 14104 GTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGC 14163 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 | | | || || ||||| || | || ||||| | |||| | || || Sbjct 14164 CAGCGAT-ACATACTGAGAACCTTTATCACTGTGATGGA--------CCGTGC-CGGACG 14213 Query 33703 GTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG 33762 || | ||||| | | ||| || || ||||||||||| || || ||| ||| |||| Sbjct 14214 GTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACG 14273 Query 33763 AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACA 33822 | ||||||||| || || || | ||| ||||| || || | ||| ||||| || | Sbjct 14274 ATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGA 14333 Query 33823 GCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGT 33882 |||| |||||||| ||| || |||||||| | |||||| ||||| | ||||| | Sbjct 14334 CGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 14393 Query 33883 CAGCCTTGAACTGCCGGTTGACTCGGT--CCAGCGGGCGCGGCGCGGTCACATCGG-TAA 33939 | ||| |||||| ||||| || |||| || |||| || || || ||| | | Sbjct 14394 CTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACG--GCTTTC----CGGCTGA 14447 Query 33940 TCGTCGTGCGAACACGCTTACC---GCGAACTGCGCCACGCAAG-CCCTGCAGCTTCATC 33995 | ||||| || || ||||| | |||| || ||||| ||| | | ||| Sbjct 14448 TGGTCGTACGGACCTTTTTACCCCAGAGAACACCG----GCAAGTCCCATAACCGCCATG 14503 Query 33996 AACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACC 34055 | ||| | || ||||| | ||||| | || |||||||| || ||| |||||| Sbjct 14504 AGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACT 14563 Query 34056 TTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAA 34115 || |||| ||||| |||| || | | | || |||| ||||| || | Sbjct 14564 TTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTC---TTTCTTC 14620 Query 34116 AGC---TCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTG-TGCTGC 34171 ||| | |||||| | ||| ||||| | |||||| ||||| || || | || ||| Sbjct 14621 AGCCAGTTATCGCGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTCGCTGTTGC 14677 Query 34172 ATGGCGTCGGTAGCCC---GACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCC 34228 || | |||| | ||||||||||| ||| | |||| | ||| ||||||| Sbjct 14678 -TGACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCC 14736 Query 34229 GAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCC 34288 | | || || ||| ||| | | | | ||| || | ||||||||| |||| Sbjct 14737 GTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCC 14796 Query 34289 GCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTC 34344 ||| || ||| | ||| ||| | ||||| ||||| | ||||||||||| Sbjct 14797 ACCTTCGCAAAATAAGCGGAAGCCTGGCGAAGAATATCGTTACTGCGGCGCAGTTC 14852 >seq215 Length=48791 Score = 84.2 bits (92), Expect = 7e-12 Identities = 157/225 (70%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 19361 TGTACGGGATCGACCTGAAATGGGCGTTCCCGGGTGACGGCTCCGCCGGCGACACGCAGC 19420 ||| ||| |||| |||| |||| ||||| | || || ||| || || |||| Sbjct 33217 TGTTCGGCATCGGTTTGAAGTGGGGTTTCCCTGCTGGCG------CCGAAGATACCCAGC 33270 Query 19421 GAACGGAGATCTGGTACAGCCGCACGCCGAATCGCGACGACGCGATCAAGTTCTCGGATT 19480 | |||||| ||||||||| || ||| || | || || ||||| ||| | |||||| Sbjct 33271 GGACGGAGCTCTGGTACAACCCGACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATT 33330 Query 19481 TCGCGTTCCCGCAGGC-GTCGACGTCGTAT-CAGGGGCTCGCGGTCGGACAGGT-GTTTT 19537 | || | ||||||||| | | || || || ||| ||| || | ||| | | ||| | Sbjct 33331 TGGCATACCCGCAGGCTGACTAC--CGCATGCAGTCGCT-GCTGGCGGGCGCGCAGTTCT 33387 Query 19538 ATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGGCCGT 19582 ||||||||||||||||| ||| |||||||| |||| |||| Sbjct 33388 TCTTCTGGGCGCGCCTGGTGGACCGCACCGGCAACATCGGTCCGT 33432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170643615646350