Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq1098 114 3e-21 seq813 105 1e-18 seq328 96.9 7e-16 seq59 93.3 9e-15 >seq1098 Length=31487 Score = 114 bits (126), Expect = 3e-21 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 353 ATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTC 412 ||| ||||| || |||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 15519 ATTCTTGGTAGGCCGTGCGGGATTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTC 15460 Query 413 TACCGACTGAGCTAACGACCCAA 435 |||| ||||||||||||||||| Sbjct 15459 TACCAGCTGAGCTAACGACCCAA 15437 Score = 111 bits (122), Expect = 3e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 8732 TTGGTAGGCCGTGCGGGATTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTACC 8673 Query 417 GACTGAGCTAACGACCCAA 435 ||||||||||||||||| Sbjct 8672 AGCTGAGCTAACGACCCAA 8654 Score = 111 bits (122), Expect = 3e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 15670 TTGGTAGGCCGTGCGGGATTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTACC 15611 Query 417 GACTGAGCTAACGACCCAA 435 ||||||||||||||||| Sbjct 15610 AGCTGAGCTAACGACCCAA 15592 Score = 107 bits (118), Expect = 4e-19 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 352 TATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCT 411 |||| |||| || |||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 8572 TATTCGTGGTAGGCCGTGCGGGATTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCT 8513 Query 412 CTACCGACTGAGCTAACGACCC 433 ||||| ||||||||||||||| Sbjct 8512 CTACCAGCTGAGCTAACGACCC 8491 >seq813 Length=65357 Score = 105 bits (116), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||| || |||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 20837 TGGTAGGCCGTGCGGGATTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTACCA 20896 Query 418 ACTGAGCTAACGACCC 433 ||||||||||||||| Sbjct 20897 GCTGAGCTAACGACCC 20912 >seq328 Length=55360 Score = 96.9 bits (106), Expect = 7e-16 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| |||||||||||| ||||||| | ||||||| | |||||||||| Sbjct 54200 TGGTGGGTCGTGTGGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCA 54141 Query 418 ACTGAGCTAACGACCCAATTA 438 |||||||||||||||||| || Sbjct 54140 ACTGAGCTAACGACCCAAATA 54120 >seq59 Length=87448 Score = 93.3 bits (102), Expect = 9e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| |||||||||||| ||||||| | ||||||| | |||||||||| Sbjct 10541 TGGTGGGTCGTGTGGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCA 10600 Query 418 ACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 10601 ACTGAGCTAACGACCC 10616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100687251980700