Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq685 275 2e-69 seq2269 273 8e-69 >seq685 Length=77197 Score = 275 bits (304), Expect = 2e-69 Identities = 553/818 (68%), Gaps = 4/818 (0%) Strand=Plus/Minus Query 43184 GCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAGCCTCGACGAAGGC 43243 |||||| ||||| ||| |||| ||||| ||||| ||| ||| || || |||||||| Sbjct 7443 GCCGTCTTCGACATTCAGCCTGTTCAGCGATCGCCAGTCCTTGCCCGCTTCAACGAAGGC 7384 Query 43244 AAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGGGGCCGCCTGCAGG 43303 || | || ||| ||||| | ||| || || || || | || ||||| | Sbjct 7383 CAGCCTCAACCAAGTCTTGAAAAACAGGTTCGGTACGCGGTGCATTGGACCGCCGTCGAA 7324 Query 43304 GTCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGACGCCTCGCAGGCGCTTCTTTTC 43363 | ||| || || |||| | ||||| ||||| || || || ||| || | Sbjct 7323 ATGGCCGGGGAGAGGCATACGGCCCAGGATATCGCCTACCGAACGAAGCGACTTTTTCAC 7264 Query 43364 GGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCG--CAACAAGCAGGAAGCGC 43421 || || || | ||| ||||| | ||| || ||| | || |||||||| || Sbjct 7263 AGGTTCATAGATGAAGTCCGGCACCTT--GTTGATGTTGCGGCCGACGAGCAGGAATCGT 7206 Query 43422 TTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGTGGTCTCGGCGACGGCG 43481 || ||| ||| | | || |||| || ||||| ||||| || |||||||| |||| Sbjct 7205 TTACGGGATTGAGCGAGGCCACCGAGCTCGCCGCAATCGTGCGTCGTCTCGGCAGTGGCG 7146 Query 43482 AAATTGTAGCTCCGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTTCATG 43541 | ||||| |||||||| || |||||||||||| | ||||||||| ||| | Sbjct 7145 TACCCGTAGCGGCGCAGCAGTTGAACGATCTGATCGAGGAGGCGGCGGCCACGATTCTGG 7086 Query 43542 ATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGC 43601 ||||| ||||| || ||||||| |||||||| || || | |||| |||||| |||||| Sbjct 7085 ATGCGAGGCACGTTCTCGAAAACGATCAGCTCCGGGAGGTCATCCTGGAAGGCCTCCAGC 7026 Query 43602 ATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGCGCTC 43661 |||||||| ||||| || | || || || || | ||||| |||||||||||| ||| Sbjct 7025 ATCAGCCATACGCCACGTAGGGTTAGACGGTTCAATGCCTGGTACTTGGCGGTCTTGCTG 6966 Query 43662 GACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGATATCG 43721 | || ||||||| ||| ||| |||||||| || || || | ||| ||||||| | Sbjct 6965 CGGTTTTCCGACAGCAGTCCGCTGAACCCTTTGCAGGGGGCCGAGAGGAAGACGATATGG 6906 Query 43722 GGGAACTCGCCATGCGCTGCGCGCCGAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGA 43781 ||| | ||||| || || | || || || ||| || | |||| || | Sbjct 6905 GGGTATTCGCCGCCGGCCGCATGACGGATATCTGCCGCAGTGGCTTCGCGCCACTCCCGC 6846 Query 43782 TCAGGGTCGCGACTGTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTG 43841 || || | ||| ||| || | |||| || | ||||| |||||||| | ||| Sbjct 6845 GGCGGCTCTTTGCCGTGGAAGTCCTTGAACTGATCACGATCGAAGAGATCGAGGACGGTT 6786 Query 43842 CCGGGAACGCCGGCAAGGCGCGTGAAATCACGGATGGCCGCCGGATCGTTGTCGATGCCC 43901 ||| || ||| ||||| ||||| ||||| || |||| | | ||||||||| Sbjct 6785 CCGCGAGATCCGCTGAGGCGTTCAAAATCCCGGATTGCTGCCGCGTTGACGTCGATGCCA 6726 Query 43902 CCGATGCAGCGGAACTTGGCATTCAGACTACCGACACGAGCCGATCCCTTGTTGAAGCCT 43961 |||||||||||||||||| | | || | || || |||| | |||||||| ||| Sbjct 6725 CCGATGCAGCGGAACTTGCCTTGGAGGTTCCCTACGCGAGGGTTGGCTTTGTTGAAACCT 6666 Query 43962 TTGGCGCCGGCACCGAGCCCGCAAAACAGATGAAAGTG 43999 || || || | || |||||||| ||||| || || || Sbjct 6665 TTAGCTCCACCGCCCAGCCCGCAGAACAGGTGGAAATG 6628 Score = 82.4 bits (90), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 41910 GTCTCGCCGGTCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCC 41969 |||| ||| || | | || || || ||||| || | | ||| ||||||| || Sbjct 8573 GTCTGCCCGCTCCAGACCAGGAGTAGGGTGGTACCGAACGCCTCGCCGATCGCTTCGGCT 8514 Query 41970 GCATCCGGAGGTACCGCGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTGGCCGTCG 42029 |||||||| || |||||||| ||||| ||||| | ||| | |||||| | |||||| Sbjct 8513 GCATCCGGGGGCACCGCGTTGCCGATCCGCTCCCTCCAGTCACCATCGGAGAGCCCGTCG 8454 Query 42030 AGGGTGA-ATATCTCGTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGT 42088 || | ||| ||| || || || | ||||| || | ||| | ||||| ||||| Sbjct 8453 AGTTCCAGATA-CTCTTCCGGCTCGATCAGGCTTTGGAGCGCACAGAGTTCGAGCGTGGT 8395 Query 42089 GAACGGACGATGCCACGTG 42107 ||| ||||||||||| ||| Sbjct 8394 GAAGGGACGATGCCAGGTG 8376 >seq2269 Length=4732 Score = 273 bits (302), Expect = 8e-69 Identities = 512/745 (69%), Gaps = 17/745 (2%) Strand=Plus/Plus Query 43178 CAGGTTGCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAGCCTCGAC 43237 ||||| |||||||| ||||| |||||||| || |||||| || ||| ||||| || Sbjct 1618 CAGGTGCCCGTCCTCTACGGCCAGCTTGTTCAGGCTGCGCCAGTCACTGCCGGCCTCAAC 1677 Query 43238 GAAGGCAAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGGGGCCGCC 43297 ||| || ||||| |||||||| ||||||||||| || | ||||| | |||||||| Sbjct 1678 GAAAGCTAGGCGTACCCACGTTTTCCACTGCAGTCGCGGGATGCGATGCATCGGGCCGCC 1737 Query 43298 TGCAGGGTCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGACGCCTCGCAGGCGCTT 43357 |||| ||||| || | |||| | | | || | |||||||| | || |||||||| Sbjct 1738 AGCAGCATCGCCAGGGAATGGCATTCTGCCCAGCACGTCGCCGACCGCGCGTAGGCGCTT 1797 Query 43358 CTTTTCGGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCGCAACAAGCAGGAA 43417 ||| | |||||| || |||||||| ||||| || ||||||||| || |||||||| Sbjct 1798 CTTCTGGGGCTCATACAGGAACGGTGGCACCTTCTCCATGTGGCGCGCTACCAGCAGGAA 1857 Query 43418 GCGCTTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGTGGTCTCGGCGAC 43477 ||||||||||||||| ||| || || | || ||||||||||| ||||| ||||| || Sbjct 1858 GCGCTTGCGGCTCTGCGCCAGGCCACCCAGCTCGCCGCAGTCGTGCGTGGTTTCGGCCAC 1917 Query 43478 GGCGAAATTGTAGCTCCGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTT 43537 |||| || | | | |||||| ||||||| ||||||| | ||||| || | Sbjct 1918 GGCGTAACCGAACTGCTGCAGCAACTGGTTGATCTGGTCGAGCAGGTGTCGGCCGCGCGT 1977 Query 43538 CATGATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTC 43597 | ||||||||| || ||||| | ||| || | | | || || |||| || Sbjct 1978 GGCTAGGCGCGGCACGTTCTCGAACACGATTAGGTCGACCGGGTTATCGGCCCAGGCCTC 2037 Query 43598 CAGCATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGC 43657 ||||||||| | || ||| | ||||||| || | |||||||| |||||||| Sbjct 2038 GGCCATCAGCCATATGCAGCGAAGCGTCAGCTCGTTTAACGCCTGATATTTGGCGGTTTT 2097 Query 43658 GCTCGACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGAT 43717 ||| | ||| ||||| || ||| ||||| || || | | | ||| ||||| Sbjct 2098 ACTCAGCGATTCGCTCAGCAGACCCGAGGCGCCTTTACAAGGCGAGCTGATGAAAACGAT 2157 Query 43718 ATCGGGGAACTCGCCATGC--GCTGCGCGCCGAATGTCGTC--CGGTACCGCCTGCTGCC 43773 | || ||||| ||| ||||| || ||||| || | | ||| |||| ||| Sbjct 2158 GTTCGGCGACTCG--TTGCCAGCTGCCCGGCGAATATCAACGGCCGTA--GCCTCGCGCC 2213 Query 43774 AATCGGGATCAGGGTCGCGACTGTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGA 43833 || ||| || || | ||| || || ||||||| | | |||||| || | Sbjct 2214 AACCGGACGGCGGCTCTTTGCCGTGGAATGCGGTGTACTGCGCACGTGTGAACAGGTCCA 2273 Query 43834 GCAGGGTGCCGGGAACGCCGGCAAGGC--GC---GT-GAAATCACGGATGGCCGCCGGAT 43887 | ||| || || || | || ||| || || |||||| | ||| || || |||| Sbjct 2274 TGACGGTACCAGG---GCGGCCAGGGCCTGCACAGTCGAAATCCCTGATCGCAGCTGGAT 2330 Query 43888 CGTTGTCGATGCCCCCGATGCAGCG 43912 | ||||||||||| |||||||| || Sbjct 2331 CATTGTCGATGCCGCCGATGCAACG 2355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183579064002180