Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq211 105 2e-18 seq909 84.2 6e-12 seq1667 82.4 2e-11 >seq211 Length=76543 Score = 105 bits (116), Expect = 2e-18 Identities = 278/417 (67%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 30400 ACGGCGTGGCGACGGCTTATGTGGAAGGCGGC-ACGTTGCGGATCCAGCGTTCCGTAACC 30458 ||||| | || || ||||| |||||||| |||| ||| || ||||| || | ||| Sbjct 24564 ACGGCATCGCCACCGCTTACTACGAAGGCGGTTACGT-GCGCATTCAGCGGGCCATCACC 24622 Query 30459 ACATACAAAAAGAATGCATATGGCGTGGCAGACAACAGCTATCTGGACAGTGAAACACTG 30518 || ||| | ||||| || | ||| ||| ||||| |||||||||||| ||||| ||| Sbjct 24623 ACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATTCCTATCTGGACAGCGAAACCCTG 24682 Query 30519 CATACCAG--CGCATATGTTCTTCGCAAACTGAAATCGGTCATCACAAGCAAGTACGGAC 30576 | ||||| || | | | | ||| ||| | || ||||| ||||||||||| | Sbjct 24683 C--ACCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGC 24740 Query 30577 GCCACAAGCTGGCAAATGATGGTACCCGTTTTGGTCCTGGGCAGGCGATTGTTACTCCTG 30636 ||||||| || || ||| || || || ||||| | || ||| |||| || || || Sbjct 24741 GCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGA 24800 Query 30637 CCGTTATCAAAGGGGAGCTTCTGGCGACATATCGTC-AGATGGAGCGTGCCGGTATTGTG 30695 | ||| || ||||| | || || || | || | || | | || |||| Sbjct 24801 GCACCATCCGCGGTGAGCTGATTGC-CCAGTACGCCAAGCTCGAACTGGAAGGCCATGTG 24859 Query 30696 GAAAATTACGATCTGTTTAAACAGTATCTGATAGTTGAGCGTGATGCGGATAACCCGAAC 30755 || || ||| ||||| || | ||||| || ||||| || | |||||| | Sbjct 24860 GAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCGAGCGCGACAGCCAGGACCCGAGC 24919 Query 30756 CGACTGAACACGCTGTTCCCGCCGGATTATGTTAACCAGTTACGTGTCTTTGCGGTG 30812 || | ||| |||||||||||||||||| || ||| | | || || || ||| || Sbjct 24920 CGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACGGGCTGCGGGTGTTCGCGCTG 24976 >seq909 Length=21192 Score = 84.2 bits (92), Expect = 6e-12 Identities = 163/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 13147 GGGGCTT-AAAGGCCTGGCAAAATCCGGTGGTTTTCCGTTGATTGCGCTGAGTCAGCTCT 13205 ||||||| ||||||||||||||| || | || |||| |||||| ||||| Sbjct 7737 GGGGCTTGAAAGGCCTGGCAAAAGAACTCGGCTGCCCCGTGATCGCGCTGTCCCAGCTGA 7796 Query 13206 CCCGCGGTGTGGAGTCCAGGCCC-AATAAACGCCCCATGAACTCAGACCTGAAAAATTCC 13264 |||| |||| | | |||| |||||||| ||| ||| || ||| || | || Sbjct 7797 ACCGCTCGCTGGAA-CAACGCCCGAATAAACGTCCCGTGATGTCCGACTTGCGCGAATCG 7855 Query 13265 GGGGAAATAGAGGCGGATGCAGACATCATTCTGATGCTTTACAGGGATGAAGTGTACAAC 13324 || | || ||| |||||| ||| | || ||| | ||||| | || || ||||| ||| Sbjct 7856 GGCGCTATCGAGCAGGATGCCGACGTGATCCTGTTCATTTACCGCGACGAGGTGTATAAC 7915 Query 13325 CCGGATACGCAGGCCAGGGGCATCGCAGAAATCAATATCACGAAACAACGTAACGGT 13381 || || ||| | || ||| | || ||||||| ||| ||||||||||||||| Sbjct 7916 CCCGACTCGCCAGACAAGGGAACGGCCGAAATCATCATCGGTAAACAACGTAACGGT 7972 >seq1667 Length=2119 Score = 82.4 bits (90), Expect = 2e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 15528 TATCCTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGCCTGGCGGGttttt 15587 ||| ||||||||||||||||||||| |||||||||||||||||||| | || ||||||| Sbjct 1679 TATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCTGGTTTTT 1738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136095762233970