Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq98 168 6e-37 seq531 141 9e-29 seq689 120 3e-22 >seq98 Length=772300 Score = 168 bits (186), Expect = 6e-37 Identities = 766/1194 (64%), Gaps = 38/1194 (3%) Strand=Plus/Plus Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCAT 37495 |||| || ||||| ||||||| | ||||||| |||||||| |||| || || |||| Sbjct 408323 AATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCAAATGGTA 408382 Query 37496 AGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTT 37555 | | || | ||||| |||| ||||| ||||| ||||| | ||| | ||||| || Sbjct 408383 AACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGTCTGTGGC 408442 Query 37556 TCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTA 37615 | | || || | | ||| || ||||||||||| ||| || |||||||| | Sbjct 408443 GCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATTTTATTCA 408502 Query 37616 GATTTT---TAACTAG-TATTTT-CGTAATTATTCTCAACTTGTCGAACAT-AAATACGT 37669 | || || | | || || | | || || || || | || || ||| | Sbjct 408503 GGTTCAGGGTAGCCTGATAGGTTACATCAT-AT----AATTTCT-GATGATCAAACTCTC 408556 Query 37670 TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729 || | |||||| | ||| | | || | || |||||||||||||| || |||| Sbjct 408557 CGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTCTT 408616 Query 37730 CGTTACTAAATTGTATAATCTCTGTACAGAGATT---ACTCGATCTAATTGTTCCCAAAT 37786 | | || | | |||||| |||||||| || || ||| | | || ||||| |||| Sbjct 408617 TGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACT---TTTGATGGTTCCTAAAT 408673 Query 37787 TGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTT 37846 | || |||||||| | || | ||||||||| | | ||| || ||||| || Sbjct 408674 TTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTT 408733 Query 37847 CTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGATCGCTTTA--- 37902 | || || | || | ||| | ||| || || | |||||||| | | |||| Sbjct 408734 CAATCTGTGAATCCAGAATGGCAAACCA-AAGCTCTTGTGCTTTAATGGT---TTTACGG 408789 Query 37903 --AtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA- 37959 | | |||||| |||||| |||||| | || || | | || | || Sbjct 408790 GCACGTCCTTCTTT--TTCGTAACGCTCATATAAAGCATCGAATTC-TGCACCAAAGCAA 408846 Query 37960 TCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACG 38019 || | ||| || ||| ||||| | || | ||| ||| | | || |||||| Sbjct 408847 TCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACC 408906 Query 38020 CGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCT 38079 | | ||| || | ||| |||||| | ||| ||||||||| ||| | | |||| Sbjct 408907 CTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCT 408966 Query 38080 TCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCT 38139 || || || || || | | | |||||| | | ||| || |||||||| || Sbjct 408967 TCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCC 409026 Query 38140 ATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTG 38199 | ||||| | | || ||| | |||| | || ||||| | | ||| | | || Sbjct 409027 AGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTA 409086 Query 38200 TTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATA 38259 | ||| ||| | | ||||||||||| || ||||| | |||||| | || ||| Sbjct 409087 TCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAATA 409146 Query 38260 TAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT 38319 |||| ||| | || || || ||| || || || || |||||||| || ||| Sbjct 409147 TAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTGAA 409206 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 ||| |||| ||||||||| ||||| | || ||||| |||||||| |||| || | Sbjct 409207 ATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTC 409266 Query 38380 AGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 |||| ||| || |||||||||||| || || | || |||||||| || || | | Sbjct 409267 AGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTT 409326 Query 38440 GCATGTATGAACCATTTTTCCGACAAATAA--TTATATGTTTCTATTACATCATCTATAT 38497 ||||| | ||||| || || || | ||||| ||| | || || || |||| Sbjct 409327 GCATGCGTAAACCAGCGCTC--ACTCATCAGGTTATACGTTGCAATCGCACTTTCAATAT 409384 Query 38498 CACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTT 38557 | | |||||| |||| | || | ||| | || |||||| || | ||||| | || Sbjct 409385 CTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTA-CAATT 409443 Query 38558 TATTATTCT-GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 | | |||| ||| || ||||| |||||||| | ||||| | ||||||||| Sbjct 409444 TGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAA 409497 Score = 147 bits (162), Expect = 2e-30 Identities = 579/896 (65%), Gaps = 21/896 (2%) Strand=Plus/Plus Query 11324 GTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCT 11383 || |||||||| | |||||||| |||| || ||| || || ||||| || || ||| Sbjct 410087 GTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCT 410146 Query 11384 TCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAA 11443 | || || || ||||||||| ||| ||||| ||| | | ||| | || Sbjct 410147 TGCAGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAA 410206 Query 11444 CCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAA 11503 || | || | |||| ||||| || || || |||||||| ||||| | | Sbjct 410207 CCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCA 410266 Query 11504 TTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACC 11563 ||||| || || || | ||||| | ||| |||| | ||| |||||||| || | ||| Sbjct 410267 TTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACC 410326 Query 11564 GCATCAATGATTAT-CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAA 11622 || || ||| || | | | | ||||||| || || | | |||| | Sbjct 410327 GCGTCGCGGATAATTCCATGA-ACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATA 410385 Query 11623 CATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAA 11682 | | || ||||| |||||||| | || || ||||| || | |||||| ||| Sbjct 410386 AAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAA 410445 Query 11683 TGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGA 11742 |||| || ||||||| |||| |||||| | ||| || || | | || | | || | Sbjct 410446 GGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGC 410504 Query 11743 A-AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGC 11801 ||||| || || ||||| || || || || || | | ||| || | || || Sbjct 410505 TGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAA---TTTCCGC 410561 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 ||||| ||||| || ||||| || ||||| || | || |||| | Sbjct 410562 CCTCAATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGG 410621 Query 11862 CGTTAAATAAATGCAT---TTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | | || | || | ||||||| | |||| | | ||| ||||| || | | Sbjct 410622 CATGGAACA---GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCG 410678 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 ||| |||| || || || |||||||| || || || ||||| ||||| || || | Sbjct 410679 CATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTT 410738 Query 11979 CTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 | | | |||||| || | ||| || | | | || | || ||||||||||| || ||| Sbjct 410739 CGGGAAGCTGTACTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCA 410797 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097 || | |||||||| || |||||||| || || | ||| || || |||| || Sbjct 410798 CTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTG 410857 Query 12098 TCCCAAT-CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC--C 12154 ||||| | | ||| || | || | || | ||||||| ||||||| |||||||| | Sbjct 410858 TCCCAGTGCTTCT-GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTC 410916 Query 12155 ACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 ||| | |||||||||| |||||| ||| | || |||||||| |||| ||| || Sbjct 410917 ACT--CTTCTTATACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 141 bits (156), Expect = 9e-29 Identities = 307/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 11473 GAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGC 11532 |||||| || ||| |||||||| | || |||||| ||||| | ||||| || | || Sbjct 87712 GAATTCAATGTACAGAGACATTTGTCCACTATTCATTCCTATTAAGTCCACTGGCAAAGA 87771 Query 11533 AACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTC 11592 |||| | |||||| ||||| | |||||||| || || ||| ||| || Sbjct 87772 CTCTGTTACAAACTCTTTTTCACAGTCTACCGCATCTCGAATGATGGACTCTATTG--TC 87829 Query 11593 CTTAGATGGTGGATGT--AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAA 11650 | | | | | ||| | ||| | || | | || ||| ||||| |||||||||||| Sbjct 87830 GATGGGTCGAGTTTGTTTAGTAACTTGCTATAGAGTAGACAGGCAAAGTCACAATGTAAA 87889 Query 11651 CCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttt 11710 ||||| || | ||| || || || || | | || |||||||| || ||||| Sbjct 87890 CCTTCATCGCGACTGATATACTCGTTCGAGTGGGCCAGACCAGGCATCAAGCCACGTTTC 87949 Query 11711 tttATCCAAAATATAG--CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 || | ||| ||||| | ||| || | ||||| || || || || || || ||||||| Sbjct 87950 TTGAGCCAGAATATCGAACAGAAACTT--CCAGAGAAAAAGATACCTTCGACTGCTGCAA 88007 Query 11769 ATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAAT 11825 |||| || | ||| ||| || | | | |||| | |||||| ||||||| Sbjct 88008 ATGCCACCAGTCTCTCTGCAAACGATGCAGAGTTGTT---TATCCAACGAAGAGCCCAAT 88064 Query 11826 CAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTA 11885 |||| |||||||| || ||| ||||| |||||||| || ||||| | | ||||| | Sbjct 88065 CAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCATTGAATAACTTGGTCTTTTCAA 88124 Query 11886 TATTATCTCTTACATATGTATCTATTAATAAACT 11919 ||||| | | |||||||||||| |||| ||| Sbjct 88125 ATGTATCTTTAATATATGTATCTATCAATAGACT 88158 >seq689 Length=46727 Score = 120 bits (132), Expect = 3e-22 Identities = 207/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||| || || || ||||||||||| | || || | || || ||||| || || Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATAT--AGCAGCAAATGAACCAGAAAAG 11746 || ||||||||||| || || || | |||||| || | ||| || | |||||| || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACT--ACCAGAGAAA 18199 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || ||||| || |||||||| || || | | || || | |||| | || Sbjct 18198 AAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGAATTTGAG 18139 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||| | ||||| ||||| ||||| || || ||| || || ||||| || || Sbjct 18138 ATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATTG 18079 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTT-ACATATGTATCTATTAATAAACTAT 11921 || |||| ||||| | || |||| | ||||||||| ||||||||||||| Sbjct 18078 AACAAATTGGCCTTTTCAACTGGAT-TCTTAATATATGTATCGATTAATAAACTAT 18024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||||| | |||||||||||||| || || || ||||| || ||||||||||| || ||| Sbjct 17920 CTATAGGTCTCTGAATGAATATTCTCAATGGCAATTTGGAAACCATAGAAACAACGAGCC 17861 Query 11978 TCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036 |||| || || || ||| ||| | | || || ||||| |||||||||||||| Sbjct 17860 TCTGGGATTTGGACCTCTGCCATGAAA-CGTGTAGCCAAGTTCTCGTTTACAATACCATC 17802 Query 12037 ACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074 | || || ||||| || || ||||| | ||||||| Sbjct 17801 AGAAGCAGCGAAAAAGGCAAGGATATGAGTGATAAAGT 17764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468442778877200