Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq98 286 5e-72 seq531 159 5e-34 >seq98 Length=772300 Score = 286 bits (316), Expect = 5e-72 Identities = 1029/1587 (65%), Gaps = 32/1587 (2%) Strand=Plus/Plus Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 ||| || ||||||| ||||| || || | ||||||| | || ||| | || ||| Sbjct 408316 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 408375 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 ||||| || | || ||||| || ||||| ||||| || ||||| | ||| | ||| Sbjct 408376 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 408435 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 || || | | | || || ||| |||||| | |||||||||||| ||| |||||| Sbjct 408436 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 408495 Query 65652 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 65711 ||||| || || | | | | ||||| | | ||| || |||||| | | Sbjct 408496 TTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAA-CTC 408554 Query 65712 TCATCT-ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 65769 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 408555 TCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTC 408614 Query 65770 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 65828 | | | | ||| | ||| || || || ||||| || || ||||||||||||||| Sbjct 408615 TTTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAA 408672 Query 65829 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 65888 ||||| || || || |||| ||||| ||||| | | | || || || ||| Sbjct 408673 TTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTT 408732 Query 65889 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT---- 65944 |||||||| || || | ||| || ||| | || | || |||| || | ||| Sbjct 408733 TCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACGG 408789 Query 65945 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 66004 | | || || || ||||||| | ||| || ||||| || | || || || | Sbjct 408790 GCACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAAT 408847 Query 66005 GT-CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 66063 | ||| ||| || ||||| ||||| | || ||| ||||||| || | || | Sbjct 408848 CTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCC 408907 Query 66064 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCC 66122 | |||| || || ||| | |||||| || ||| ||||||||||||| | | |||| Sbjct 408908 TTCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCT 408966 Query 66123 TCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || |||||| || || || || || | ||| |||||| || Sbjct 408967 TCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGC 409023 Query 66180 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 66239 |||| ||| ||||| | | | || ||||| ||| ||||| || | || | ||| Sbjct 409024 TCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCG 409083 Query 66240 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 66299 || | ||| | ||| ||||||| || | ||| |||||| || || || || || Sbjct 409084 GTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCA 409143 Query 66300 ATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 66359 ||||| ||| | ||||| || ||| || || ||| || || ||||| ||| Sbjct 409144 ATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGT 409203 Query 66360 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 66419 || ||| ||| | ||||||| ||||| || || || || ||||| || ||| |||| Sbjct 409204 GAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATG 409263 Query 66420 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 66479 | |||| ||| ||| ||||||||| | | || | ||||||||||| || || Sbjct 409264 GTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGG 409323 Query 66480 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 66539 | || ||||||||||| ||| | || || ||||| |||| || || ||| Sbjct 409324 GTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATA 409383 Query 66540 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 66599 || || ||||| ||||| || |||||||| |||| || || || | ||| || || Sbjct 409384 TCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT- 409442 Query 66600 TTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 |||| || |||||||| || ||||||||||| | |||||||| |||||||| | | | Sbjct 409443 TTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAA 409502 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC 66718 | ||| || | || |||||||| || || | || || || || | || Sbjct 409503 TCCAAAATCCCTGTCATAAATAATGGTGCTGTCCAGAATCTCTGCATTTTCTTTGATCAC 409562 Query 66719 ATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTT 66778 ||| | || ||| | | || | ||| | |||| | || |||||||| Sbjct 409563 CTCCCAAACATCGTCTGCAATCAGTGAAGCAGATTTGTCTGTTTTGGAATCCACATAGTT 409622 Query 66779 GAATAAATC--CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGAT 66836 ||| | | |||||| || || ||| | || | ||||| ||||| ||| Sbjct 409623 --ATACAGCATCTCCATGGTTTTGGAGAAAGATTTCGTGGTGTTCTTGTGCAGATTAGAT 409680 Query 66837 ACGGCTATTCTAG-CGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGC 66895 || || || | | | | ||||| |||||||| ||||| | || || | ||||| Sbjct 409681 ACCGCAATACGGGAAGCCAATAAT-GCATAATCAGGATGCTTGGTGGTCAGCGAAGCTGC 409739 Query 66896 TATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGAT 66955 |||| || ||||| | |||| |||| || ||||| |||| || | |||| || Sbjct 409740 CGTTTCCGCAGCCAGGTTATCCAGTTCTGAGGTGGTTACCCCATCGTACAAACCTTCAAT 409799 Query 66956 AACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTT 67015 ||||| | || | | ||| ||||| | | || | || |||||||| || | || Sbjct 409800 TACCTTTTTCGCCACATCAATCGGATCCACCAGTTCTGCATTAAAGCCATAGCAGAGCTT 409859 Query 67016 TCTAATACGAGATGTGATTTTATCAAA 67042 | |||||| | || |||||||| || Sbjct 409860 TTCAATACGGGCGGTTATTTTATCGAA 409886 Score = 210 bits (232), Expect = 3e-49 Identities = 577/877 (66%), Gaps = 9/877 (1%) Strand=Plus/Plus Query 35865 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 35924 ||||||| || |||||||||||||| || || ||||| ||||| |||| | || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 35925 TTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAA 35984 | ||||| ||||| || |||||| | ||| ||| ||||| || | |||| ||| | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 | |||| ||||| ||||| || ||||| | ||||| || |||||| || || | Sbjct 410220 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 410279 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 410280 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 410339 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 | || ||| | ||| || || | |||| | | || || || | Sbjct 410340 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 410399 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 | || || || | ||||| ||||| ||| || || || ||| || || || |||| Sbjct 410400 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 410459 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATTCCT 36283 | ||||| | ||||| | ||| || || || || | | ||| | |||||||| ||| Sbjct 410460 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 410518 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 36343 || ||||| || || || | | | || || || | | ||| ||||| Sbjct 410519 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 410575 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 ||||| || || || || ||||||||||| | ||||||| |||| || || | Sbjct 410576 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 410635 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | |||||| | | |||||||| ||| ||||| |||| || ||| |||| || || Sbjct 410636 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 410695 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 |||||||| || || || || || || ||||| | || |||| || ||||||||| Sbjct 410696 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC- 410754 Query 36524 GTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581 | || | ||| |||| | |||||||| || || |||||||| || |||||||| | Sbjct 410755 GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 410813 Query 36582 CCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATAT 36641 | | || ||| || |||| ||| || ||| || | ||| | || | Sbjct 410814 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 410873 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 | | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 410874 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 410933 Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 |||||| ||| | |||| ||| || |||| |||||| Sbjct 410934 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 159 bits (176), Expect = 5e-34 Identities = 210/291 (72%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || || || |||| ||| || || | ||| || | ||||| || | || Sbjct 87868 ACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGCCAG 87927 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| | |||||| || || ||||| ||||| || || |||||| || || Sbjct 87928 ACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAAAAA 87987 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| ||||| ||||| || | ||||||||| || | ||| || | ||| Sbjct 87988 GATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCAGAGTTGTTTAT 88047 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| |||||||||| ||||||||||| ||||| || ||||||||||||||||| || Sbjct 88048 CCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCATTGAA 88107 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 | | | | |||||| ||||||||| ||||||||| ||||| ||||| Sbjct 88108 TAACTTGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATAGACT 88158 Score = 113 bits (124), Expect = 6e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||| | || |||||||||||||||||||| |||||||| | |||||| ||| |||| Sbjct 88220 CTATAAGTCTCTGAATGAATGTTTTCAATGGCAATTTGAAAGCTGTAGAAGGATCGAGCC 88279 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | || || ||||| | || || ||||| ||||||||| || || || ||| Sbjct 88280 TCTGGTATTTGGACTTCAGCCATGAAGCGAGTTGCTAGATTTTCATTTACAATGCCATCA 88339 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT 36612 ||| ||||| || || | |||||||||||||| | | |||| || Sbjct 88340 GAGGCAGCAAAGAATGCAAGCACATGTTTTATAAAGTGTCTTTCATT 88386 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 36624 TATTCCAAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 |||||| || ||| |||||||| |||| ||| | || | | ||||| ||||||||| Sbjct 88479 TATTCCCATTCATAGATATCTTGTGATAGATCGATATCATTAGCAGTCCAGAATGATGCC 88538 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 ||||| ||||||||| ||||| ||||| | |||| |||||||| | ||||||||| Sbjct 88539 TCTGCAGATTTATACATCTTCCAAATGTCTGGGTATTTGATTGGAAACAGAACAAATCTG 88598 Query 36743 TT-TTGATTT 36751 || ||| ||| Sbjct 88599 TTCTTGTTTT 88608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658057578624200