Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7603 120 3e-22 seq6140 100 2e-16 >seq7603 Length=749 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 || || || ||||||||||||||||| ||||| || |||||| |||||||||| | | Sbjct 607 GTGAGCAGCGCGTAGCTGGCGATGTTGAACGGAACGCCGAGGAACATGTCGGCGCTGCGC 548 Query 21078 TGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAA 21137 ||||||||||||||||| |||| || || ||||| ||||| | ||| |||| || Sbjct 547 TGGTACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACTGGAAGAAAGCGTGGCAC 488 Query 21138 GGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCG 21196 || | || |||||| ||| | ||| ||| ||||||||| | | | ||| ||||| Sbjct 487 GGCGCCAGGGCCATCTGCGGAATGTCGGCGACGTTCCACGCCGAAACGATGATCCGCCG 429 >seq6140 Length=1248 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20952 TGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATC 21011 || || || |||| ||||| || || || ||||| ||| |||||||| || || | | Sbjct 394 TGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGCGCCACC 453 Query 21012 AGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCG 21071 | ||||| ||||| ||| ||||| || ||||| || ||||| || |||||| Sbjct 454 ATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATATCGGCG 513 Query 21072 GACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACG 21131 || | |||||| ||||||||||| |||| || |||||||| ||||| ||| | Sbjct 514 GAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAACAGGCAG 573 Query 21132 TGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 || || || || || ||||| ||| | ||| || ||||| ||| Sbjct 574 TGGCAGGGCGGCAGCGCCATTTCATCGACGAGCGCCGGATTCCATGCG 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427702984652400