Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq211 122 2e-23 seq2164 89.7 1e-13 >seq211 Length=76543 Score = 122 bits (134), Expect = 2e-23 Identities = 299/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 8516 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8575 || ||||| ||||||||| || | ||||| | ||| | || || || || | Sbjct 24527 CGCTTCACTCTGACCGAGCGCCAATCGCTGCTCAACTACGGCATCGCCACCGCTTACTAC 24586 Query 8576 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATGCTTACGGG 8635 ||| |||| ||||||||||||| | ||||||| ||| ||| || || | ||| Sbjct 24587 GAAGGCGGTTACGTGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGC 24646 Query 8636 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8693 ||||| || ||| || |||||||| || ||||| ||||| || | | | ||| Sbjct 24647 CAGGCGGACAATTCCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGC 24704 Query 8694 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 8753 || ||| | ||| || ||||| ||||||||||| ||||| || || ||||| | Sbjct 24705 GCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCA 24764 Query 8754 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAAGGGGAACTGCTGG 8813 | |||||||| |||| ||| |||| ||||||||| ||| || || ||| | | Sbjct 24765 CGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTG 24824 Query 8814 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGT 8873 | ||| |||| || | | || ||||| ||| ||| ||||| || Sbjct 24825 CCCAGTACGCCAAGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGC 24884 Query 8874 ACCTGGTTGTGGAGCGTGA-TGCCAGCGTTCCGAACCGCCTGAACACGCTGTTCCCGCCT 8932 ||||| | || ||||| || ||||| | |||| ||| | ||| |||||||||||| Sbjct 24885 ACCTGATCGTCGAGCGCGACAGCCAG-GACCCGAGCCGGGTCAACGTGCTGTTCCCGCCG 24943 Query 8933 GACTATGTTAACCAGTTGCGTGTTTTTGC 8961 || || || ||| | |||| || || || Sbjct 24944 GATTACGTCAACGGGCTGCGGGTGTTCGC 24972 >seq2164 Length=1578 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 20592 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 20643 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118495489811160