Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq689 105 5e-18 seq531 82.4 5e-11 >seq689 Length=46727 Score = 105 bits (116), Expect = 5e-18 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCA-TATTCTGG 22806 |||| ||||| || || || || || | || ||||| | ||| | || | || ||| Sbjct 18171 TGGCGTTTGCAGCCGTCGAGGGTATCTTTTTCTCTGG-TAGTTTCTGTTCAATCTTTTGG 18229 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || ||||| ||| | |||||||| ||| | ||||||||||||||||| ||||||||| Sbjct 18230 CTCAAGAAGCGTGGATTGATGCCAGGTTTGACCTTTTCCAACGAGTTGATCAGCCGTGAC 18289 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCT 22898 |||||| | ||||| |||||||| ||| |||| Sbjct 18290 GAAGGTTTGCACTGCGACTTTGCCTGTCTGCT 18321 >seq531 Length=89189 Score = 82.4 bits (90), Expect = 5e-11 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGG--CCATATTCTG 22805 |||| ||||| || || ||||| || | || ||||| | || | | | |||||||| Sbjct 88013 TGGCATTTGCAGCAGTCGAAGGTATCTTTTTCTCTGGA--AGTTTCTGTTCGATATTCTG 87956 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||| ||||||||| | ||||| || |||| || ||||||| || || || || Sbjct 87955 GCTCAAGAAACGTGGCTTGATGCCTGGTCTGGCCCACTCGAACGAGTATATCAGTCGCGA 87896 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGC-AAACAAAC 22921 |||||| |||| ||||||||||| ||| | || | || |||| | | |||||||| Sbjct 87895 TGAAGGTTTACATTGTGACTTTGCCTGTCTACTCTATA-GCAAGTTACTAAACAAAC 87840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356172795934015