Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq48 109 5e-19 seq98 104 2e-17 seq593 95.1 1e-14 seq420 95.1 1e-14 seq689 93.3 4e-14 >seq48 Length=44992 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||||| |||||||| |||||||||||||| ||| Sbjct 22403 GCCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGA 22344 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| ||||| || || || ||| |||| ||||||||||||||||| || Sbjct 22343 TAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGG 22284 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || || |||| | || | || || | ||| | Sbjct 22283 AATGCCCTCCTTGTC-TTGAATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGA 22225 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || ||||| || || || || || ||||| Sbjct 22224 CCTCCAGTGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| |||||||| ||||||||||| || ||| | Sbjct 22630 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAC 22571 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||| || || ||| |||| || | ||| |||||||| || Sbjct 22570 AATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGG 22511 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 22510 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACT 22451 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || | || || ||||| || ||||| Sbjct 22450 TCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || ||||||| |||||||| ||||||||||| || || Sbjct 22861 TGACCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCA 22802 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || |||||||| || ||||| | || |||||||| |||||||| Sbjct 22801 GAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGT 22742 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || ||||| ||||| ||| | || || || | | || | || || | ||| Sbjct 22741 GGGATTCCTTCCTTGTC-TTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTC 22683 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | |||||||| || | || |||||||| || ||||| Sbjct 22682 AACCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 >seq98 Length=772300 Score = 104 bits (114), Expect = 2e-17 Identities = 337/519 (65%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| ||||| ||||| | || ||||||||| ||||| || || || Sbjct 410610 GTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGGGCGGAAA---- 410555 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||||||||||| |||| || || || ||||||||| | || || || || Sbjct 410554 --TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGC 410497 Query 52669 TTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAAC 52728 || | || || | | |||| ||| | ||||| || || || ||||| || Sbjct 410496 TTCTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAAT 410437 Query 52729 GAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACG 52788 |||||||| || | || || || ||||| || ||||| || || |||||| | | Sbjct 410436 GAGTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATG 410377 Query 52789 CGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGAC 52848 | | ||| | ||| || | ||| ||| | || | || || || || Sbjct 410376 CTC---AAAAATAAACTGAGCCAGGAAGTCGTTCATGGAATTATCCGCGACGCGGTAGAA 410320 Query 52849 ATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACC 52908 || ||||| || ||| |||| || || || || || | || | || ||||| || | Sbjct 410319 ATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAA 410260 Query 52909 ATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCA-GCC 52967 |||||| |||| || ||||||||||| |||||| | || | | || ||| | || Sbjct 410259 CTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACC 410200 Query 52968 GAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAA 53027 ||||| ||| |||| || || ||| |||||| | | || || || | ||||| Sbjct 410199 AAAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAA 410141 Query 53028 AACAAACTTTTTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065 ||| || || || |||| ||||||||| || || ||||| Sbjct 410140 AACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 410102 >seq593 Length=58250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||||| || ||||||||||| || || | |||| || ||| Sbjct 29357 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29298 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || || || || ||| |||| |||||||| |||||||| || || ||||| ||||| || Sbjct 29297 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTC-TTG 29239 Query 139676 ATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || || || | | || | ||||| | ||| || || | ||| | ||||| Sbjct 29238 AATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTT 29179 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || ||||| || ||||| || ||||||||| || Sbjct 29178 TCCAGTCAAGGTCTTTACAAAGATTTGCATACCT 29145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | ||| || || | || ||||| ||||||||||| || ||| Sbjct 29834 TGACCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCG 29775 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | || ||||| || || || ||| |||| |||||||| |||||||| Sbjct 29774 GAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGT 29715 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || || ||||| ||| || || | | || | ||||| | | ||| Sbjct 29714 GGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCG 29655 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| | ||| | |||||||| || | || ||||| || ||||||||| || Sbjct 29654 ACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCATACCT 29601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| |||||||| ||||||||||| || || | |||| || ||| Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || || || || ||| |||| |||||||| |||||||| || || ||||| ||||| | Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | ||||| | ||| ||||| | ||| | ||||| Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTA 28950 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || ||||| || ||||||||| Sbjct 28949 CCAGTAAGAGTCTTTACAAAGATTTGCATA 28920 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| || || | ||||| || ||||||||||| || ||| Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || ||||| || || || || | || || | ||| |||||||| || Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || || ||| | | || | ||||| | ||| || Sbjct 29483 ATTCCTTCCTTGTC-TTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGAC 29425 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | |||||||| || | || ||||| |||||||||||| || Sbjct 29424 TTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCATACCT 29373 >seq420 Length=40905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| ||||||||||| || ||| Sbjct 13775 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAT 13834 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || ||||| || || || ||| |||| |||||||| |||||||| || Sbjct 13835 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 13894 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || |||| | || | ||||| | || ||| Sbjct 13895 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACC 13954 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 13955 TCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| ||||||||||| || ||| Sbjct 14003 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 14062 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || || || || |||||| |||| || | ||| |||||||| || Sbjct 14063 AGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGG 14122 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 14123 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACC 14182 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | |||||||| ||||| || || || || |||||||| Sbjct 14183 TCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 14229 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | ||| || |||| |||||||||||||| ||||| || || Sbjct 13316 TGACCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCA 13375 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || || || || || |||||| |||| || |||||||| ||||| Sbjct 13376 GAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGT 13435 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||| ||||| ||| || || | | || | ||||| | ||| Sbjct 13436 GGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCA 13495 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| || || | || || ||||| || ||||| Sbjct 13496 ACCTCCAAGGTAATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 >seq689 Length=46727 Score = 93.3 bits (102), Expect = 4e-14 Identities = 170/246 (69%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 |||| || | || | | |||| ||||| || |||| ||| |||||||||| ||||| Sbjct 18078 TCAATGCCATAGAGACTATTCCATGTGTCAAGAAGAAGGCTGACTGGGCATTGAGATGGA 18137 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 || ||| ||| | |||||||| ||| |||| |||||||| || || ||| Sbjct 18138 TCTCAAATTCCAAGTCG---TTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTA 18194 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710 | ||||| || |||||||| |||| |||| |||| || | ||| | ||||| Sbjct 18195 TCTTTTTCTCTGGTAGTTTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGAT-TGATGCCA 18253 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 || | || ||| |||||||||||| || |||||||| ||||| || ||||| Sbjct 18254 GGTTTGACCTTTTCCAACGAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGCC 18313 Query 52771 TGTTTG 52776 ||| || Sbjct 18314 TGTCTG 18319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495977157796000