Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq98 163 3e-35 seq689 84.2 2e-11 >seq98 Length=772300 Score = 163 bits (180), Expect = 3e-35 Identities = 569/881 (65%), Gaps = 14/881 (2%) Strand=Plus/Plus Query 13579 TTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 |||||||||| |||| || | ||| |||||||| || ||||| |||| ||| || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 13639 TTTCCATAAAATCAAATGGATTTATTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 13697 | |||||||||||||| ||| || || ||| | | | ||| | |||| ||||| Sbjct 410160 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 410218 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 || |||| || |||| |||||||||||| || ||||| | | |||||| || || Sbjct 410219 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 410278 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || || || | || || | |||||| ||||| || || || || ||| Sbjct 410279 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 410338 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 13875 || || | || | | || |||||| || |||| ||| | || | Sbjct 410339 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 410396 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 410397 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 410456 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTC 13995 |||||| |||| |||||| ||||| || || | | || |||| ||||| || | Sbjct 410457 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 410516 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 | || ||||| || || || | || ||||| |||| ||| | | |||| Sbjct 410517 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 410570 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 | |||||||| | |||||| || | | || | || || | |||| || | Sbjct 410571 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 410630 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 410631 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 410690 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 |||| ||||||||||| ||||| || |||||||| || | ||||| | |||| Sbjct 410691 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 410750 Query 14236 CTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 |||| | | || | | | || | |||||||| || || || ||||| || |||||| Sbjct 410751 CTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAA 410809 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT 14354 || || | ||| | ||| || | |||| | | || | || | ||| | Sbjct 410810 AAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTC 410869 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414 || | |||||| || | ||| ||| | ||||| ||||| || || || |||||| Sbjct 410870 TGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATAC 410929 Query 14415 ATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| |||| ||||| ||| ||||| |||| ||||| Sbjct 410930 ATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq689 Length=46727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 199/298 (67%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| || || || | || || || | || || | ||||| ||||| || || Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAAAG 13988 |||||||||||||| || || || | |||||| |||| ||| || | || || || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACT--ACCAGAGAAA 18199 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||| || || |||||||| | || || || ||||||| || || Sbjct 18198 AAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGA---CTTGGAATTT 18142 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 || |||||| | ||||| |||| || || || | | | || || || || ||| Sbjct 18141 GAGATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCA 18082 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 || || |||| |||| || | | | ||| |||||||| || | ||| |||| Sbjct 18081 TTGAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479644017617000