Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq98 172 5e-38 seq531 98.7 1e-15 seq689 91.5 1e-13 >seq98 Length=772300 Score = 172 bits (190), Expect = 5e-38 Identities = 573/882 (65%), Gaps = 16/882 (2%) Strand=Plus/Plus Query 13367 ttttttGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 |||||||||| |||| || | ||| ||||| || || ||||| |||| ||| || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAAT 13485 | ||||||||||| || ||| ||| || ||| | | | ||| | |||| ||||| Sbjct 410160 TCTCCATAAAATCAAACGGA-TTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGC 410218 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13545 | |||| || |||| |||||||||||| || ||||| | | |||||| || || Sbjct 410219 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 410278 Query 13546 AGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 || || || | || || | |||||| ||||| || || || ||| ||| Sbjct 410279 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 410338 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACG 13663 || | || | || | | || |||||| || |||| ||| | || | Sbjct 410339 ATTCCATGAACGACTTCCT--GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 410396 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 |||| |||||||| | ||||||||||| ||| | || || ||| |||| |||| Sbjct 410397 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 410456 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||||| |||| |||||| ||||| || || | | ||| ||| ||||| || | Sbjct 410457 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGC 410516 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCC 13843 | || ||||| || || || | | ||||| |||| ||| | |||| Sbjct 410517 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATCC 410570 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 | |||||||| | |||||| || | | || | || || | |||| ||| | Sbjct 410571 AGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACA 410630 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 || || |||| || | | ||| || ||||| || || | ||| |||||| Sbjct 410631 GCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAG 410690 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 |||| |||||||| || ||||| || ||||||||||| | ||||| | |||| Sbjct 410691 AGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA 410750 Query 14024 CCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 | || | | || | | |||| | ||||||||| ||||| || ||||| || |||||| Sbjct 410751 CTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAA 410809 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGC 14141 || || | ||| | ||| || | |||| | | || | || | ||| | | | Sbjct 410810 AAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTC 410869 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | || | |||||| || | ||| ||| | ||||| ||||| || || || ||||| Sbjct 410870 T-GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATA 410928 Query 14202 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 |||| |||| ||||| ||| ||||| |||| ||||| Sbjct 410929 CATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 || ||| ||||| |||||||| | || ||||| | ||| ||| ||||| || | Sbjct 87865 TAGACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGC 87924 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 | || |||||||| || ||||| || | ||| ||||| | | ||| ||| || || Sbjct 87925 CAGACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAA 87984 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 || || || || ||||| ||||| || | |||| ||| |||||||||| ||||| Sbjct 87985 AAAGATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCAGAGTTGTT 88044 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 | ||||| |||||| |||| || ||||| | | | ||||| || || || Sbjct 88045 T---ATCCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGC 88101 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAA---ATGTATGTATCAATA 13944 ||||||||| | ||| || ||| ||| || |||||| |||||||| Sbjct 88102 ATTGAATAACTTGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATA 88154 >seq689 Length=46727 Score = 91.5 bits (100), Expect = 1e-13 Identities = 198/296 (67%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||| || || || | || || || | || || | ||||| ||||| || || Sbjct 18316 ACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAA 18257 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||||||||| || || || | |||||| |||| | ||| || || || || Sbjct 18256 ACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAA 18197 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 || ||||| || || |||||||| | | || || ||||||| || ||||| Sbjct 18196 GATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGA---CTTGGAATTTGA 18140 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||| | ||||| |||| || || || | | | || || || || ||||| Sbjct 18139 GATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATT 18080 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 ||| |||| |||| || | | | ||| |||||||| || | ||| |||| Sbjct 18079 GAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACTAT 18024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478505017048200