Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq98 131 2e-25 seq593 100 3e-16 seq48 98.7 1e-15 seq420 95.1 1e-14 >seq98 Length=772300 Score = 131 bits (144), Expect = 2e-25 Identities = 309/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 50406 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50465 ||| ||||||||||| ||||| || ||| ||| ||||| | || || ||| ||||| Sbjct 410554 TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTT 410495 Query 50466 TGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGA 50525 | || || | | |||| |||| | ||||| || || || ||||| || || Sbjct 410494 CTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGA 410435 Query 50526 GTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCG 50585 ||||||||| | || || || ||||| || ||||| || || || || | || Sbjct 410434 GTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCT 410375 Query 50586 CGTAAATGAAAAATTATCATACGAAACAATTT-TGGACATGTTCAAAGAAGCCGTCGACA 50644 | |||| ||| | | | | ||| || |||| || || || || || || | Sbjct 410374 CAAAAAT--AAACTGAGCC-AGGAAGTCGTTCATGGA-ATTATCCGCGACGCGGTAGAAA 410319 Query 50645 TCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACA 50704 ||||||| || ||| | || || || || || || || || | || ||||| ||| | Sbjct 410318 TCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAAC 410259 Query 50705 TGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACA-ACCG 50763 |||||| |||| |||||||||||||||||||||| | || | | ||||| | ||| Sbjct 410258 TGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACCA 410199 Query 50764 AAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAA 50823 ||||| ||| |||| || || ||| |||||| | | || || || | |||||| Sbjct 410198 AAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 410140 Query 50824 ACAAACTTTTTCGAAAGACGTGTAGGCGAATA-CAAAA 50860 || || || || || | |||||| || || || ||||| Sbjct 410139 ACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 410102 >seq593 Length=58250 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| |||| ||| | ||| ||||| | |||||||| ||||| |||||||| ||| Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || |||||||| || || || | || || | ||| |||||||| || Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || || ||| | | || | ||||| | || || Sbjct 29483 ATTCCTTCCTTGTCTTGAATCTTG-GTCTTAACATTGTCGATGGTGTCAGATCCCTCGAC 29425 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | ||| | |||||||| || | || ||||| |||||||||||| || Sbjct 29424 TTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCATACCT 29373 >seq48 Length=44992 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || |||| ||||| || |||||||||||||| ||| Sbjct 22174 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGAT 22115 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || |||||||| || ||||| | || |||||||| |||||||| || Sbjct 22114 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGG 22055 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | || || | || || Sbjct 22054 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCGACC 21995 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| |||||||| |||||||| |||||||| Sbjct 21994 TCAAGTGTGATGGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCAT 21948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || |||| ||||| || ||||| ||||| || ||| Sbjct 22403 GCCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGA 22344 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| |||||||| || || ||| |||| ||||||||||||||||| || Sbjct 22343 TAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGG 22284 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || |||| | || | || || | || || Sbjct 22283 AATGCCCTCCTTGTCTTGAATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGAC 22224 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || |||||||| || || || || ||||| Sbjct 22223 CTCCAGTGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 >seq420 Length=40905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || ||||| || | ||| | ||| ||||||| ||||| ||||||||||||||||| || Sbjct 13316 TGACCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCA 13375 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| || || ||||| || |||||| |||| || |||||||| ||||| Sbjct 13376 GAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGT 13435 Query 143075 GGTATGCCTTCTTTGTC 143091 || || ||||| ||||| Sbjct 13436 GGGATTCCTTCCTTGTC 13452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506925640791600