Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq404 116 5e-21 seq531 102 1e-16 seq689 95.1 2e-14 >seq404 Length=78127 Score = 116 bits (128), Expect = 5e-21 Identities = 315/478 (66%), Gaps = 7/478 (1%) Strand=Plus/Minus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| ||||| | || || |||||||| || || | || || | || | ||||| ||| Sbjct 49425 GCCATCTACCTCGAGCCATGGCACGCCGATGTCATGGAGTTCCTTGACCTTCGCAAGAAC 49366 Query 96966 TCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTG 97025 || |||||| || ||| | ||| | ||||| || |||||||| | ||| | Sbjct 49365 CACGGAAAGGAAGAGATGCGTGCCCGTGACCTCTTTTACGCCCTCTGGGTATCCGATCTC 49306 Query 97026 TTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCC 97085 || ||| |||| ||| | | | | | | |||| || | || ||| || | | || Sbjct 49305 TTTATGGAGCGTGTCGAGGCCAACGCCGAGTGGACACTCTTTTGTCCCAACGAGGCCCCA 49246 Query 97086 GGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAG----CA 97141 ||||| | ||||||||||| || ||||| || ||||| ||||||| | Sbjct 49245 GGTCTCGCTGATTGCTGGGGAGACGAGTTCCGCGCTCTCTACACCCGCTACGAGGCCACC 49186 Query 97142 AGAGGGC-CGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGG 97200 ||| | || | || |||| | || | || | ||| || ||| |||| | | Sbjct 49185 CCAGGTCTCGGT-CGCAAGACCA-TCAAGGCCCAAGATCTCTGGTTCTCCATTATCGAGT 49128 Query 97201 CTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCA 97260 | ||| | |||||||| || || || || ||||||||||| || ||| ||| | Sbjct 49127 CGCAGATTGAGACTGGCACCCCATATATCCTCTACAAGGACGCCTGCAATGCCAAGTCAA 49068 Query 97261 ACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACG 97320 |||||| | | ||||||||| || ||||||| || ||||| || ||||| | ||| Sbjct 49067 ACCAACAGAATCTCGGCACCATCCAGTGCTCCAACCTCTGCACAGAGATTGTCCAATACA 49008 Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 ||||||| ||||| ||| || ||| || || ||| | || ||||||||||| Sbjct 49007 CCTCTCCCGACGAAGTGGCCGTGTGCAACCTCGCCTCGATTGCCCTACCCAAGTTTGT 48950 Score = 114 bits (126), Expect = 2e-20 Identities = 140/185 (76%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||||| |||||||||| | | | | || || |||||||||||||||||| | Sbjct 48190 TCTACAAGACTGTTTGGGAGATTC-GTCAACGTACACTTATCGATATGGCTGCCGACCGT 48132 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| ||||||||| || || || ||||| | | | |||| ||| ||| | | Sbjct 48131 GGTGCCTACATTGATCAAAGCCAGAGCTTCAACGTTTTCATTGCTGAG-CCATCGTTTGC 48073 Query 98157 C--GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 | || |||| ||||| ||||||||| | ||||| ||||| | ||||| || ||||||| Sbjct 48072 CAAGT-TGACCTCGATGCACTTTTACTCGTGGAAGAAGGGATTGAAGACTGGAATGTACT 48014 Query 98215 ATCTG 98219 || || Sbjct 48013 ATTTG 48009 >seq531 Length=89189 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| || || |||||||||||||| || || || || || ||||| || || || ||| Sbjct 88032 TCGTTTGCAGAGAGACTGGTGGCATTTGCAGCAGTCGAAGGTATCTTTTTCTCTGGAAGT 87973 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || | || || ||||||||||| || || | ||||| || ||| | ||| ||| Sbjct 87972 TTCTGTTCGATATTCTGGCTCAAGAAACGTGGCTTGATGCCTGGTCTGGCCCACTCGAAC 87913 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590 |||| ||| ||| || || || |||| |||||||||||| |||||| | | |||| Sbjct 87912 GAGTATATCAGTCGCGATGAAGGTTTACATTGTGACTTTGCCTGTCTACTCTATAGCAA 87854 >seq689 Length=46727 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| ||||| | ||||||| || || ||||| ||||| ||||| || || |||||| Sbjct 18152 TCGTTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTTTTCTCTGGTAGT 18211 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || | |||||||||||||||||||| ||| | ||||| || |||| ||| Sbjct 18212 TTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTGACCTTTTCCAAC 18271 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 ||||| || || ||||| || | ||||| ||||||||| ||| || Sbjct 18272 GAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGCCTGTCTGCT 18321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740929468323800