Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq24 210 6e-50 seq400 190 5e-44 seq211 165 2e-36 seq816 93.3 1e-14 >seq24 Length=857 Score = 210 bits (232), Expect = 6e-50 Identities = 230/305 (75%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 38077 CATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACC---GCCAGTCATAGT 38133 |||||||| || ||||||||| || ||| | ||||| || | ||||| | Sbjct 543 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA--- 599 Query 38134 CTGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCC 38193 |||| ||||||||||| | | || | || ||| || ||||||||||||| ||||| || Sbjct 600 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 659 Query 38194 CTTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGC 38253 || |||| || ||| || |||||| | ||| ||||||||||||| ||||||||| |||| Sbjct 660 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 719 Query 38254 GATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTGTCG 38313 |||| ||| |||||||| |||||||| ||| | |||| || ||||| ||||| Sbjct 720 GATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTG--- 776 Query 38314 ACAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGCCCGCCCCAGACTGGCAGAC 38373 || || ||||| ||||| || ||||||||||||||||| |||| ||||||||||| Sbjct 777 ---CGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGAC 833 Query 38374 TCCGC 38378 |||| Sbjct 834 ACCGC 838 >seq400 Length=38681 Score = 190 bits (210), Expect = 5e-44 Identities = 396/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 37390 CCAATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGGTATCCGCATAT 37449 |||||| | | || || ||||| || | | ||| | |||||||||||| |||||| Sbjct 32483 CCAATTCCGCCGCGCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATAT 32542 Query 37450 TACGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCCATGTTCATTGC 37509 || |||||||||| || || || || ||| ||| | ||||| ||||| || || Sbjct 32543 CACCGCGGCAATGAAAGAGTTTGGCATCGAACAACCGCTGCACCAGGCGATGTTTATCGC 32602 Query 37510 ACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTCAACTACTCGGT 37569 || || |||||||| ||| | || |||||| |||| || | |||||||||| || Sbjct 32603 GCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTACAGCGT 32662 Query 37570 AGATGGGCTGATGAAAACCTTTGGTAAA---CGCCTGACGCCGTATCAGTGTGAAATGCT 37626 || |||||| | | ||| ||||| || | | |||| | | ||| Sbjct 32663 AGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACTCAGGGTCAGGCTAACGCGCT 32722 Query 37627 GGGGCGTGTCGATGGT-AAGCA--------GGTGGCCCACCAGCCGCAAATAGCCAATCT 37677 ||| ||| | |||| || || | ||| | ||||| || ||||| || Sbjct 32723 GGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGCCAGCGTGCGATCGCCAACCT 32782 Query 37678 AGTTTACGGTGGCCGCATGGGTAACAAAGACGCCGGA--GATGGCTGGAAGTATCGCGGG 37735 || ||| | | ||||| ||||| | | | || || |||||| || | |||| Sbjct 32783 GGTGTACAGCAAAAGAATGGGGAACAACG--GTCCGACTGACGGCTGGTTTTACCTCGGG 32840 Query 37736 CGTGGGCTTATCCAGATTACCGGGCTGGAGAATTACACCAGATGCGGCGTTGCCCTGAAA 37795 || |||||||||||||| ||||||||| | || || | |||||| || |||||| Sbjct 32841 CGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAG 32900 Query 37796 CTGGATCTGGTGGCGAATCCGGGACAGCTTGAACTGGATCGTCATGCCGCCCGTTCCGCA 37855 |||||||||| | | || | | ||| | | ||| | || ||||| ||| Sbjct 32901 GTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCG 32960 Query 37856 GCGTGGTTTTTTGTGACTAGAGGGTGTCTGAAATACTCCGGCGACCTGGTGCGCGTTACG 37915 |||||||| || | || | ||| || |||| ||| ||||||||||||||||||| ||| Sbjct 32961 GCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACG 33020 Query 37916 CAGATCATTAACGGAGGGCAGAACGGCATCGGTGACAGGCGAGAGCG 37962 |||||||| || || |||||||||||||||| ||| |||| | ||| Sbjct 33021 CAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGTGCGCG 33067 >seq211 Length=76543 Score = 165 bits (182), Expect = 2e-36 Identities = 281/403 (70%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 8778 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 8837 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 24600 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 24659 Query 8838 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 8895 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 24660 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 24717 Query 8896 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 8955 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 24718 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 24777 Query 8956 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 9015 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 24778 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 24836 Query 9016 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTGG 9074 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 24837 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 24896 Query 9075 AGCGTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 9134 |||| || | || ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 24897 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 24956 Query 9135 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177 | | || ||||| || |||| |||||||||||| ||||||| Sbjct 24957 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTA 24999 >seq816 Length=14434 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 28149 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGTCTTTTTAC 28208 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 5752 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 5693 Query 28209 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 28268 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 5692 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 5633 Query 28269 TATATCGACAAAAATAAGATCTCCGGGTTCAATTGTTGGTGCCATGCTGTCACCGCGCAC 28328 ||||| || || | ||||| || ||||| || ||| || |||||||||||||||||| Sbjct 5632 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 5573 Query 28329 GTTAAT 28334 |||||| Sbjct 5572 GTTAAT 5567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128333853326910