Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq816 111 4e-20 seq400 89.7 1e-13 seq1130 87.8 5e-13 seq2164 86.0 2e-12 seq12036 82.4 2e-11 >seq816 Length=14434 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 5137 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 5196 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11441 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 11382 Query 5197 TTAC 5200 |||| Sbjct 11381 TTAC 11378 >seq400 Length=38681 Score = 89.7 bits (98), Expect = 1e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 7959 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGGGGTTGGCTTGCGGCGAT 8018 ||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||| Sbjct 4489 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGC-TGCGGCGAT 4431 Query 8019 AAAT 8022 | || Sbjct 4430 ATAT 4427 >seq1130 Length=54118 Score = 87.8 bits (96), Expect = 5e-13 Identities = 87/110 (79%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 25646 TTTGAAGAGTTCCGTCTATATCATCGCGACGAGAACGGCAAGATTGTCAAGACCAACGAT 25705 |||||||||||||| | ||||| ||| | || |||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 25706 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 25753 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 >seq12036 Length=352 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 19910 CGCGACCTGGACAATCTACCAAAAGCCGTTTTTGACGCACTCACTAGTGCGGGCTTCTGG 19969 || |||||||| ||||| | |||||||| ||||||||||||||||| || || |||||| Sbjct 247 CGTGACCTGGATAATCTGCAAAAAGCCGCTTTTGACGCACTCACTAAAGCAGGTTTCTGG 306 Query 19970 CTGGATGA 19977 |||||||| Sbjct 307 CTGGATGA 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130029571266210