Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq328 125 1e-23 seq256 120 5e-22 seq165 116 7e-21 seq362 107 3e-18 seq59 105 1e-17 seq329 100 5e-16 seq627 89.7 9e-13 seq11887 87.8 3e-12 seq4143 84.2 4e-11 >seq328 Length=55360 Score = 125 bits (138), Expect = 1e-23 Identities = 83/92 (90%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 ||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| || Sbjct 54041 TTTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTT 53982 Query 271792 GCTCTACCGACTGAGCTATCACGGAATTAAAT 271823 |||||||||||||||||||||||||| || || Sbjct 53981 GCTCTACCGACTGAGCTATCACGGAACTACAT 53950 Score = 105 bits (116), Expect = 1e-17 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 273264 ATTAAA-ATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCG 273322 |||||| |||||||| || ||| || |||||||||||||||||||||||||||||||||| Sbjct 54473 ATTAAATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCG 54414 Query 273323 CGCTACC-AACTGCGCTACACTCCG 273346 ||||||| ||||||||| || ||| Sbjct 54413 CGCTACCGGACTGCGCTATACCCCG 54389 Score = 100 bits (110), Expect = 5e-16 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 54123 AATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 54064 Query 273327 ACC-AACTGCGCTACACTCC-GTATTTAAATTGG 273358 ||| ||||||||| || || || || ||||||| Sbjct 54063 ACCGGACTGCGCTATACCCCGGTTTTGAAATTGG 54030 >seq256 Length=183033 Score = 120 bits (132), Expect = 5e-22 Identities = 74/79 (94%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||||| |||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 58885 ATGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAAC 58826 Query 272931 CAACTGAGCTATAGGCCCT 272949 ||||||||||||||||||| Sbjct 58825 CAACTGAGCTATAGGCCCT 58807 >seq165 Length=230050 Score = 116 bits (128), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 |||| || ||||||| ||||||||||||||||||||||||| ||||||||||||| || Sbjct 48971 TTTACTATCTGGCTCCACGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTT 48912 Query 271792 GCTCTACCGACTGAGCTATCACGGAAT 271818 |||||||| ||||||||||| |||||| Sbjct 48911 GCTCTACCAACTGAGCTATCGCGGAAT 48885 >seq362 Length=339261 Score = 107 bits (118), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 272870 TATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAA 272929 ||| ||||||||||| || || ||||| ||||||||| ||||||||||| ||| |||||| Sbjct 246163 TATAGTGGGCCCAGCTGGGCTCGAACCAGCGACCAAGAGATTATGAGTCTCCTACTCTAA 246104 Query 272930 CCAACTGAGCTATAGGCCC 272948 ||||||||||||||||||| Sbjct 246103 CCAACTGAGCTATAGGCCC 246085 >seq59 Length=87448 Score = 105 bits (116), Expect = 1e-17 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 273268 AAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 273327 |||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 10328 AAATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 10387 Query 273328 CC-AACTGCGCTACACTCCG 273346 || ||||||||| || ||| Sbjct 10388 CCGGACTGCGCTATACCCCG 10407 >seq329 Length=155757 Score = 100 bits (110), Expect = 5e-16 Identities = 75/87 (86%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320 ||| |||| |||||||| || || || ||||||||| |||||||||||||||||||||| Sbjct 11114 ATTTTTAATATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGG 11055 Query 273321 CGCGCTACC-AACTGCGCTACACTCCG 273346 ||||||||| ||||||||| || ||| Sbjct 11054 CGCGCTACCGGACTGCGCTATACCCCG 11028 >seq627 Length=36274 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| Sbjct 25376 TGGCTCCCCGACCTGGACTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCA 25317 Query 271801 ACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 25316 ACTGAGCTATCAGGGAA 25300 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| Sbjct 25993 TGGCTCCCCGACCTGGACTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCA 25934 Query 271801 ACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 25933 ACTGAGCTATCAGGGAA 25917 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| Sbjct 33990 TGGCTCCCCGACCTGGACTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCA 33931 Query 271801 ACTGAGCTATCACGGAA 271817 |||||||||||| |||| Sbjct 33930 ACTGAGCTATCAGGGAA 33914 >seq11887 Length=486 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | ||||| ||||| | |||||||| ||||||| |||| |||||||| Sbjct 68 ATGGTGGGCCCGGAGGGACTCGAACCCCCAACCAAGCGGTTATGAGCCGCCGGCTCTAAC 127 Query 272931 CAACTGAGCTATAGGCCC 272948 ||| ||||||| |||||| Sbjct 128 CAATTGAGCTACAGGCCC 145 >seq4143 Length=2504 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 271755 GGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCGACTGAGCTAT 271810 ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1472 GGACTCGAACCCCGGACCCAGTGATTAAGAGTCACTTGCTCTACCAACTGAGCTAT 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896783779301200