Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq6367 129 4e-25 seq249 109 4e-19 seq9164 86.0 4e-12 >seq6367 Length=825 Score = 129 bits (142), Expect = 4e-25 Identities = 137/178 (77%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 99691 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAG 99749 ||||| |||||||| | |||||| ||||||||||| ||| ||||||||||| | ||| | Sbjct 433 AGGTGCGGGATACCTTCGTACGGCGTGAGCTCGAC-CATCTTGGGGTCGATGAGGATCAT 375 Query 99750 TTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCT 99809 || || || || || ||| ||||| ||| || ||||| ||||| | |||||| Sbjct 374 CCGTACTTCTTCCGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCT 315 Query 99810 GGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTC 99867 |||| ||||| ||||||| ||| |||||||| || || |||||||| || |||||| Sbjct 314 CGACTAACCCGAGCCGGTCGAGCCTGCCACCAGAAGGTGGGGCATCTTCGCGAGGTTC 257 >seq249 Length=98374 Score = 109 bits (120), Expect = 4e-19 Identities = 232/338 (69%), Gaps = 19/338 (6%) Strand=Plus/Minus Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGCG--CTGCGCGCCCCCACTGGCAGAAAT 99285 ||||||||||||||||| || | ||||| ||| ||| | ||| |||| | Sbjct 86401 TCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTG---GTGCCCGGCGGCATGTAG 86345 Query 99286 AACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 99345 | | |||||| |||| ||||||||||| ||||||| ||| | ||| |||| | Sbjct 86344 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86285 Query 99346 TCGGTGAGG---GACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGG 99402 ||| | | ||| | ||| |||| || || | || | |||| |||||| ||| Sbjct 86284 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86228 Query 99403 CCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCA 99462 || || | ||| ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86227 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86168 Query 99463 CGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCA 99520 ||||||||||| ||||| ||| | || ||| | || ||| |||||| | | || Sbjct 86167 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCA 86113 Query 99521 TCATGAGATCAGCGAGTTCATCCACCACTACCACGATG 99558 |||| | || || | ||| || ||||| ||||||||| Sbjct 86112 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86075 >seq9164 Length=436 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 99730 TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACC 99789 || || ||||||||||| || | | | || |||||| ||||| |||||||| | Sbjct 376 TTCGGATCGATCATGATCAGGCGGCACTGTTCCGGGGTCATGCGGTAAAGCAGCGACAGG 317 Query 99790 AGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGC 99849 | ||| | ||||||| ||| || ||||| ||||| | || || |||||||||||| Sbjct 316 ATCATGGTGTTGATGGCAACGGATTTACCCGAGCCGGTGGTACCTGCAACCAGCAGATGC 257 Query 99850 GGCATCTTAGCCAGGTTCAGGGA-GATGTCCTTGCCCTCGACGTCCTTGCCCACTGCCA 99907 |||||||| |||| | || | || || ||| ||| | || | |||||||| |||| Sbjct 256 GGCATCTTCGCCA-GATCGGCGATGACCGCCTCGCCATTGATGGTCTTGCCCAGCGCCA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354582667392930